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Detailed information on CNT30117253


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 8e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671966Oryza nivaraSetaria viridis25.8458.8488.08193forward
CNT30180521Oryza nivaraSecale cereale28.9229.8388.89216forward
CNT30386567Oryza nivaraTriticum turgidum14.7330.986.36110forward
CNT30554321Oryza nivaraOryza glaberrima17.5426.95100131forward
CNT30659540Oryza nivaraTriticum dicoccoides24.150.4284.44180forward
CNT30596630Oryza nivaraOryza meridionalis66.6764.8498.19498forward
CNT30370682Oryza nivaraOryza glumipatula66.6761.6399.8498forward
CNT30102748Oryza nivaraOryza rufipogon3433.295.28254forward
CNT30577207Oryza nivaraOryza barthii66.6756.9899.6498forward
CNT30604331Oryza nivaraOryza punctata68.4174.1788.26511forward

Expression of CNT30117253

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MWCGPFMSSSTRFASSNERIPSYYSLTRSSPWSS*

>peptide 2 (50 aa)
MFPIFTMAVVKALLNAAALDAKFLTVLSALPPLKSTWSECRSPLFDSRLL*

>peptide 3 (49 aa)
EGNSSLILHACLRMRSFYFGILGANAMAALLHTLDGLLERAGCHILYVY*

Sequence

>CNT30117253
GAAGGTAACAGTTCATTGATCCTCCATGCATGCCTTCGCATGAGGAGCTTTTATTTTGGTATACTAGGTGCTAATGCCATGGCTGCTCTGCTCCATACAC
TTGATGGATTGCTAGAGCGAGCTGGCTGCCATATACTTTACGTGTACTAGTACAACACCACCGTACCTATACTTGTGGTTATACTACATATATGGGTATA
TGTGGTGTGGCCCGTTTATGTCGTCGTCGACACGATTTGCTTCCAGCAACGAACGCATCCCGTCATACTACTCCTTAACTAGGAGTTCACCTTGGAGCAG
CTGAGCCTGATCTGCCCCTGCGTCCCGGTCAGCGGCGAGATGTTCCCCATCTTCACCATGGCCGTCGTGAAGGCGCTGCTGAACGCCGCCGCGTTGGACG
CGAAGTTCCTGACCGTGTTGTCCGCGCTGCCGCCGTTGAAGAGCACCTGGTCGGAGTGCAGGAGCCCCTTGTTCGACAGCAGGTTGCTGTAGTAGGCGCT
GCTGAACGCCGCCCTGTTGGAGGCGAAGTTCCTGACCGTGTTGTCCGTGCTGTTGCCGTTGAAGAGCACCTGGTCGGAGTGCAGGAGCCCCTTGTTGGAC
AGCAGGTTGCTGTAGTAGGCGTTGTCGAAGGAGTAGGGCGTCGTCGTGTCCAGCGCCGCCAGGTTGCTGTCGCCGGTGCCGGCCGTCGGCGGGCAGTTGG
CCCTGAGCGACGCCGCGTAGCCGGCGTCGATGTTGGTCTCGTTGTAG