Detailed information on CNT30117252


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695066Oryza nivaraOryza sativa76.7728.93100195forward
CNT30449694Oryza nivaraSaccharum spontaneum25.27.296.8864reverse complement
CNT30137445Oryza nivaraLolium perenne31.58.2291.2580forward
CNT30330412Oryza nivaraDioscorea rotundata31.58.5883.7580reverse complement
CNT30102767Oryza nivaraOryza rufipogon76.7726.68100195forward

Expression of CNT30117252

Peptides detected in this lncRNA

>peptide 1 (53 aa)
RRPNRRRRRKTATRRRTAAGGSTSSPSAGSGSGTARRCAPPCRAAPRLEVAMM*

>peptide 2 (49 aa)
VGRTGGGGGRRRRGGGRRRVVVHPRRLRAVGVEPRGDAHPHVEQLHVWK*

Sequence

>CNT30117252
CCGTCGGCCGAACCGGCGGCGGCGGAGGAAGACGGCGACGAGGAGGAGGACGGCGGCGGGTGGTAGTACATCCTCGCCGTCTGCGGGCAGTGGGAGTGGA
ACCGCGCGGCGATGCGCACCCCCATGTCGAGCAGCTCCACGTTTGGAAGTAGCAATGATGTGAACACAACCCAACAGACAGCTGCTGGTGATTGATTTGT
CTCGAGCTGAACTGGTGCTAATCATGCACGGTACTACTCCAGTAGTGATTTTTG