Detailed information on CNT30117222


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694654Oryza nivaraOryza sativa96.0693.8899.44537forward
CNT30554473Oryza nivaraOryza glaberrima96.0685.5199.07537forward
CNT30369472Oryza nivaraOryza glumipatula96.0694.0599.07537forward
CNT30102681Oryza nivaraOryza rufipogon96.0695.3899.44537forward
CNT30577129Oryza nivaraOryza barthii95.8996.499.07536forward

Expression of CNT30117222

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MCNACIIFFCLLIYSTILLPLSYKKNHQNSE

>peptide 2 (40 aa)
MIMSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

Sequence

>CNT30117222
CCTCAACCTTATCCATGAACGCGGCCGATAGCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGCTAAGATTATTGATTGCCCATT
TGATTGCATCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTGTT
TTTGAGAAGCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTATGAGTCCTGACAATGGGGAGCCATTCCAGAAC
TTCCTGGTTGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAGAA
ACAGCGTGCTACAGATCAACACCAAAATTCCAAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCCTTC
TAATATATTCGACAATACTCTTGCCGCTTTCATATAAAAAAAACCACCAAAATTCCGAA