Detailed information on CNT30117220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30132281Oryza nivaraLolium perenne40.6213.1791.72145forward
CNT30603708Oryza nivaraOryza punctata41.1834.4395.92147forward

Expression of CNT30117220

Peptides detected in this lncRNA

>peptide 1 (55 aa)
SLATLNLFEHIMAVLNFGQRTKKKFDLFLSRKKFSNHVQVCLSPVSILFLSIERS*

>peptide 2 (81 aa)
MYKFVFLQSRFFSSLSNEADKLMENLNFSFFFWVLERHDVGGLGVVAGEHPLCISRRSFVSPPLDAAAASTARRSLYRWHTA

Sequence

>CNT30117220
TTCCCTTGCAACACTGAATTTGTTTGAACACATCATGGCAGTACTGAATTTTGGCCAAAGAACAAAGAAGAAATTTGATCTGTTTCTTTCTAGGAAAAAA
TTCTCTAACCATGTACAAGTTTGTCTTTCTCCAGTCTCGATTCTTTTCCTCTCTATCGAACGAAGCTGACAAATTAATGGAGAATTTGAATTTCTCTTTT
TTTTTTTGGGTTTTAGAAAGGCATGATGTGGGTGGTCTTGGAGTCGTAGCCGGCGAGCACCCGCTCTGCATCAGCAGGAGGAGCTTCGTCAGCCCGCCCT
TGGACGCCGCCGCCGCCTCCACCGCGCGCCGGTCCCTGTACCGGTGGCACACCGCCC