Detailed information on CNT30117210


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 6e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Oryza nivaraOryza sativa65.3245.5299.56452forward
CNT30672255Oryza nivaraSetaria viridis29.7748.8287.38206forward
CNT30178931Oryza nivaraSecale cereale39.0242.5285.93270forward
CNT30221499Oryza nivaraHordeum vulgare38.7392.183.21268forward
CNT30680601Oryza nivaraTriticum urartu10.6921.2690.5474forward
CNT30348947Oryza nivaraEragrostis tef20.5231.4989.44142forward

Expression of CNT30117210

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKVMRRPQLAARYWQQCRGLALFPETITYSSSPAS*

>peptide 2 (36 aa)
NHRRGQIARAEKSREGPIHSKLALHLVNTTVEICSC*

>peptide 3 (50 aa)
MFPIFTMAAVKALLNAAVLEEKFLTVLSVLPPLKSTWSECRRPLLDSRLV*

>peptide 4 (29 aa)
MATRYMTSHMHTPTLSSLFRALADETIEP*

>peptide 5 (29 aa)
MKPLNHESDETATASCTLLAAMSGPSFIP*

Sequence

>CNT30117210
GAAACCATCGCAGAGGCCAGATCGCCAGAGCAGAGAAGAGCAGAGAGGGGCCAATACATTCGAAACTAGCACTTCACTTGGTTAACACGACAGTTGAAAT
CTGTAGCTGCTAGGATTACGACGAAAGAGAGGTCCGTAATCCTCATGCCTTTGCATGGCAACTCGTTACATGACATCACACATGCATACACCTACACTCT
CTAGTCTGTTCCGTGCACTTGCTGATGAAACCATTGAACCATGAAAGTGATGAGACGGCCACAGCTAGCTGCACGCTATTGGCAGCAATGTCGGGGCCTA
GCTTTATTCCCTGAGACCATCACGTACTCGTCATCACCAGCTAGTTAACCTTGGAGCAGTTGAGCCTGATCTGCCCCTGGGTTCCAGTCAAGGGCGAGAT
GTTCCCCATCTTCACCATGGCCGCCGTGAAGGCGCTGTTGAACGCCGCCGTGTTGGAGGAGAAGTTCCTGACCGTGTTGTCCGTGCTGCCGCCGTTGAAG
AGCACCTGGTCGGAGTGCAGGAGGCCCTTGTTGGACAGCAGGTTGGTGTAGTAGGCGCTGTCGAAGGCGTTGGGCGTCGTCGTGTCCAGCGGCGCCAGGT
TGCTGTCGCCGCTGCCCGTCGGCCGTGGGCAGTTGGCCTGGCGTTGCGTCGCGAAGGCGGAATCGATGTTGGTCTCGTTGTAGATCCTGTCC