Detailed information on CNT30117202


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L383|PSBE_SACHY, E-value = 7e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281965Oryza nivaraChenopodium quinoa11.727.6380.28218reverse complement
CNT3020910Oryza nivaraCitrullus lanatus12.02100.986.61224forward
CNT30286499Oryza nivaraTriticum aestivum46.6566.9593.33869forward
CNT30390749Oryza nivaraTriticum turgidum12.3523.7894.78230reverse complement
CNT30234601Oryza nivaraBrassica oleracea12.7250.3288.61237forward
CNT30555141Oryza nivaraOryza glaberrima30.6583.8597.9571reverse complement
CNT30666971Oryza nivaraTriticum dicoccoides8.8664.7198.79165forward
CNT3017135Oryza nivaraZea mays9.1836.3196.49171reverse complement
CNT30608460Oryza nivaraGossypium raimondii5.4236.5985.15101forward
CNT30355329Oryza nivaraLactuca sativa23.8362.5491.89444forward
CNT3025537Oryza nivaraPopulus trichocarpa9.1342.6190.59170forward
CNT30149874Oryza nivaraBrachypodium distachyon15.5122.4299.31289forward
CNT30576251Oryza nivaraOryza barthii11.7639.1898.17219forward
CNT30727046Oryza nivaraLupinus angustifolius9.4521.7889.77176forward

Expression of CNT30117202

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNNPVSNTGNNISKRTFSRASRHAELPKFLYIQKRN*

>peptide 2 (44 aa)
MAQQSCFAWSRNRILFFSSLFLVYRISYMVFKASIENLNFEGPT*

>peptide 3 (69 aa)
MEKEVLRIDFDWGSKKELKKSKFRKDFLFLGDPRGVVECFSSPLIPYGIQSIKIRRNRGIFDCSLQKEG*

>peptide 4 (37 aa)
MEFNPFMLTITSYFGFLLAALTLTLALFIGLNKIRLI*

>peptide 5 (30 aa)
MPHLMNPFSFTLLYLTLSCFLVLSKITDEL*

Sequence

>CNT30117202
AACATTTTGTTCATTCGGGTTTGATTGTGTCATAGTTCTATAGTTGGAATTTGGTTTATCGTTGGATGAACTGCATTGCTGATATTGATCCCAAGAAAAA
AACAGTAGGTACAGCTAGTCCGTGAACAGCCAGCCATCGCACTGTAAAAATAGGATAGGTTCGATCTATGGTCATTGAGGGCCTCCTAAAAGGATCTACT
AAATTCATCGAGTTGTTCTAAAGAATCAAAACGGTCGGTTATTAACGGAATTCCTTGTCGGCTTTCTGTGAAATACTCGTTTGGCCGAGGACTTCCAAAC
ACGTCATAAGCTAAACCCGTACTGACAAATAACCAACCCGCAATGAATAGGGAAGGTATAGTAATGCTATGAATAACCCAGTATCGAATACTGGTAATAA
TATCAGCAAAAGAACGTTCTCCCGTGCTTCCAGACATGCTGAGCTCCCCAAATTTTTGTACATTCAAAAAAGGAATTGATTCCGTAAAAGATGGGATCAA
CCAGTAAATAGAAAATTACTGATATTTCATCCTTGTGAGATTGTCAATTTTGTACCAAAGGTGTATTTTGAGTATACCAAATTAGTATAGCCATCCTTCC
TATGGCACAACAATCCTGTTTCGCTTGGTCTCGAAACAGAATTCTTTTTTTCTCTTCTTTGTTCCTTGTCTATAGGATAAGCTATATGGTATTCAAGGCA
TCAATAGAAAACCTCAATTTTGAGGGTCCTACTTAATTTTCACGGCTTCGAAATAGTAGAATAATTCGGAATAGGGCTCAAGATCTTGGGAAAATCTAAG
TTAATGATCAACAGGTTTGGATAAAGAATTTAGGAAAGATATTCTTATACTGACACAATACAAAGAGAAGTAGATGCGAAAGCTATCCCTTCGAATCCAA
CCTTTCCCCTTAAAGAATTTAATTGGTTAGCATAATATAATATCTAATAAATAGAAAATCAAATAGTAGATAATCTGTTATGAAAGAGAGAAAACATTCT
TTGAAGAATCAAGATTCGTAATCAACCCTTGCCCTGTTTACTAACTTTCTTGACCAAACTGCAAGCGTGGAACTTTGCCAGTTCTTAGGTTTCCGAAATA
GTGTAATGGAAAAAGAAGTGCTTCGAATCGACTTTGATTGGGGTTCGAAAAAGGAATTAAAAAAAAGTAAATTCAGGAAAGATTTCCTTTTTTTAGGAGA
CCCTCGAGGGGTCGTGGAATGCTTTTCTTCTCCTCTTATTCCATATGGAATACAATCAATTAAAATAAGAAGGAATAGGGGAATATTCGACTGTTCGCTC
CAAAAAGAAGGTTAAATCATCCTATTGAAAAAGACCAAAATAGAAAGAACTTTTTCAAATTCAATTCTTTATTTTTCACTGGGGTTAGCTGATCTAGTTC
TTAATATTATTACTTTACTCAATTGACAGATTACACAGCAAATCTCTTGATTCGGAATTAGGGACTCATGCCCCATCTGATGAATCCATTTTCTTTTACA
CTTCTGTATCTCACTCTATCTTGTTTTTTAGTATTATCTAAAATAACCGATGAATTATGAATTTTCCATAACTTAGGTAAGTGCTTTACCAACATATGTA
GTGTAGTAAAAAAAATGGAATTTAACCCTTTCATGCTTACTATAACTAGTTATTTCGGTTTTCTATTGGCTGCTTTAACTCTAACCCTAGCTCTATTTAT
TGGCTTGAACAAGATACGTCTTATTTGAAATGAATTGAATGAATAAGGCAGAAAAGAAAAAATCTCTCTTTTGGATTCCTGGCATTCTACGTACTAATTA
CCAATTTTTTTTTCTTGGTCATTGAGATTCATGGATAATTTAGACTACTATTTACGGATATAT