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Detailed information on CNT30117188


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006154, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553134Oryza nivaraOryza glaberrima101.0750.7891.65850reverse complement
CNT30369450Oryza nivaraOryza glumipatula100.4830.1593.85845reverse complement
CNT30107320Oryza nivaraOryza longistaminata99.1756.9794.96834reverse complement

Expression of CNT30117188

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MFKGRNNNLPCSNANKSEIGNLIIRSLKYHRLPLKYNRLY*

>peptide 2 (50 aa)
MLYLPFAAYVCLLLEDLNKNHCTEVPPLLDNLLCKVCPHSRIAVVLVRLT*

Sequence

>CNT30117188
ATATGAGTCCCGATACTCAATTCCGTGAGCACGGCTATTCGAATAGATTCATTTATACTTTACTGCAGTAAATGTACGCTTTACTCGCAGTCCACGACTT
GCCAATATTCATTAGCTTAGTCGTAGCCCAGCCTTAGGTTATTAACAATAGTGGCACCTGTTCCATGAACTCTAGTCCCCATGCGCTCTGAACGTAACGT
TATCAGCAGCGAGAGGAGTTCTGGCGTTCCCGAGGTTTTTAGAGAGAGAAATGGTTGAGAGACCCCCGTCATCTCAACCAGGTTTTCACAATACACACAC
TTGAGCTCAAAAAATCATTTACCTGCGCCTCGGTAAATGTTATATTTGCCCTTCGCGGCATATGTTTGCCTCCTGCTCGAGGACTTAAATAAGAACCACT
GTACAGAGGTACCACCTTTGCTAGACAACCTACTTTGCAAGGTCTGTCCCCATTCTAGAATTGCGGTCGTACTCGTTCGTTTGACATAAGTACTTGGTAA
TAACTATATCGACTGAGACAGTACTAGCCACCCGGAAATCAACCAATTCCTACGTACTGTCCCAATCTAAGTTCATTATATTTTTATGCAGACTAACTAG
GCAATGCTAAGCAAATCTAGCATATATCTGGTTTGCCTTATGTTCAGGTTATGCATTCAAAATCATGAATGACTAATGCATAGAATAGAGATATAGAATA
TAGGGTAATTATGTTCAAGGGGAGGAATAATAACTTGCCTTGCTCCAACGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATCCTTGAAATACCAC
AGGTTGCCTCTAAAATACAATAGACTCTACTAGAGAAGAGG