Detailed information on CNT30117165


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 1e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Oryza nivaraOryza sativa68.336.39100306forward
CNT30672063Oryza nivaraSetaria viridis50.8944.1990.79228forward
CNT30180108Oryza nivaraSecale cereale45.5493.1592.65204forward
CNT30289434Oryza nivaraTriticum aestivum51.3439.7292.61230forward
CNT30221546Oryza nivaraHordeum vulgare45.7689.9194.15205forward
CNT30554471Oryza nivaraOryza glaberrima100.8982.0398.45452forward
CNT30436341Oryza nivaraAegilops tauschii41.0760.5394.02184forward
CNT30251924Oryza nivaraAvena sativa51.1242.193.01229forward
CNT30658643Oryza nivaraTriticum dicoccoides48.8849.4491.78219forward
CNT30450022Oryza nivaraSaccharum spontaneum50.8922.0593.42228forward
CNT30681546Oryza nivaraTriticum urartu45.7693.6193.17205forward
CNT30340854Oryza nivaraEragrostis tef31.4761.8495.04141forward
CNT30596591Oryza nivaraOryza meridionalis50.8948.4197.81228forward
CNT30370660Oryza nivaraOryza glumipatula99.5577.799.55446forward
CNT30148227Oryza nivaraBrachypodium distachyon38.1767.8689.47171forward
CNT30102628Oryza nivaraOryza rufipogon99.5535.15100446forward
CNT30577143Oryza nivaraOryza barthii100.8989.1598.67452forward
CNT30496422Oryza nivaraDigitaria exilis50.8936.9588.6228forward
CNT30593977Oryza nivaraEragrostis curvula41.7484.2393.58187forward
CNT30604388Oryza nivaraOryza punctata34.8246.9998.08156forward
CNT30556620Oryza nivaraPanicum hallii47.7721.7593.93214forward
CNT30551356Oryza nivaraOryza brachyantha35.0445.3897.45157forward

Expression of CNT30117165

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTMRMQRKPLPTSLLSVHSTDSSWYSGL*

Sequence

>CNT30117165
TGTATGTGTCGCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAATTAACTTGTACAAGATACAAGCACACCACACGATAATCATACGGTACGGACGAG
CATAAGTTACTCTTAGCTACGTATATAGGTGGGTAGCTAGCAGAGAATAATTATTCTGCACCAGATTCGTTGATATCAACTTGAGCCTTGATAGAGAGCT
GGATCGATGTATCGATCAGCTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTCGGTGCCGTCGCGGA
CGCCGCCGTGGTACTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTGCCCACATCCTTGCTCTC
CGTCCACAGCACAGACTCGTCCTGGTACTCTGGGTTGTAGGGAACCAG