Detailed information on CNT30117158


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577036Oryza nivaraOryza barthii66.7493.4498.33299forward

Expression of CNT30117158

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MELNMLKSQSEKLLEEEVLGRVLSCTPVEHL*

>peptide 2 (34 aa)
MVAAIAMELERCHLHADGSGFPFPVIGAQWSSTC*

>peptide 3 (37 aa)
SHLSSCLWMAILPPDLNIPSLEAHDLATKSRHRRRPP*

Sequence

>CNT30117158
CTCCCACCTCTCCTCTTGCTTGTGGATGGCTATCCTCCCACCGGATCTGAACATCCCTAGCTTGGAGGCTCATGATCTAGCCACCAAATCCCGCCACCGC
AGGAGGCCGCCCTAGCCACTGCCATGAAGTGGAGCGGCTGCTTCGACCTTACCCCCGACAAGGCGCGATGGTAGCGGCAATAGCCATGGAGCTCGAAAGG
TGCCACCTCCACGCTGACGGAAGCGGCTTTCCCTTCCCAGTTATTGGAGCGCAATGGAGCTCAACATGCTAAAATCTCAGTCAGAGAAGCTTCTTGAAGA
AGAAGTCTTAGGTAGAGTCTTGTCTTGTACCCCAGTTGAGCACCTGTGAAGATGGAGCCGTAGGCCCGCTAGTCCGCTGTTGTTTTTTTTTTTGTTGTCA
GGCTTAATGTGCCTTTGTAATAATGTAAATATTATCGTGATAATTAAT