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Detailed information on CNT30117136


BLAST search results

BLAST vs Swiss-Prot:
sp|O04496|AED3_ARATH, E-value = 6e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695048Oryza nivaraOryza sativa23.8817.9499.28139forward
CNT30102423Oryza nivaraOryza rufipogon101.0338.5198.13588forward

Expression of CNT30117136

Peptides detected in this lncRNA

>peptide 1 (32 aa)
ADAGHVDVVERRAVRVGEQRRRLDPPRLPVPA*

Sequence

>CNT30117136
CGCGGATGCCGGTCATGTTGACGTAGTAGAGCGACGAGCGGTGCGGGTTGGCGAGCAGCGGCGTCGTCTTGATCCGCCGCGGCTGCCCGTTCCGGCCTAG
CCGGAGCGTGCCGGAGAAGTTGAGCGACTTGAAGCTCGGGAGGCAGTAGGAGAACGTCGCCCCGTACATGTCCTTGGTCTGAGACAGGAAGGAGAGCGGG
CCACGGCCGAGCCCGAGGAGGCCCTGCGGCGGCGCCGCCGTGCCGGTGGCCCTCTGCAAGCAGCCGAAGGTGTAGGCCTTCACGACGTCGCCGGCGACGG
CGAGGGTGTCCTGCGACAGCGCGGCCTGGAGGGAGGAGTCGGCGTAGGAGAGGCTGAAGCCGCAGGACTTGGCGTTGGGCGAGCACGACGGGTTGGGCGC
CAGCACGCACTGCGGCGAGCCGCACGGCACCGGGCGGTAGGAGGCGGGCGCGCACCACGTACGTCGGCGTCTGCAGCAGCTGCCTCCCCGACGCGATCGG
CGCGTACGCGCGCCCCTTCACCGCCAGCGAGTCGAGGTACAGCAGCCTCGACGCGTCGCGCGCCGCCTGCTCCGCCAGGAAC