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Detailed information on CNT30117124


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694621Oryza nivaraOryza sativa96.6291.4199.52628forward
CNT30554333Oryza nivaraOryza glaberrima96.6297.9799.2628forward
CNT30102477Oryza nivaraOryza rufipogon96.6298.7499.52628forward
CNT30576943Oryza nivaraOryza barthii96.4696.9199.2627forward

Expression of CNT30117124

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIMSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

>peptide 2 (44 aa)
MCILSAQDVCTRISRLELAISGDPEAKIIDCPFDCICGELKISS*

>peptide 3 (30 aa)
MCNACIIFFCLLIYSTILLPLSYKKNHQNSE

Sequence

>CNT30117124
CCTCAACCTTATCCATGAACGCGGCCGATAGCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGGCATGCCTTTGGATCATGTGTA
TTTTATCTGCTCAAGATGTGTGTACAAGAATAAGTAGGCTGGAGTTGGCAATAAGTGGTGACCCGGAGGCTAAGATTATTGATTGCCCATTTGATTGCAT
CTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTGTTTTTGAGAAG
CCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTATGAGTCCTGACAATGGGGAGCCATTCCAGAACTTCCTGGTT
GAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAGAAACAGCGTGC
TACAGATCAACACCAAAATTCCAAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCCTTCTAATATATT
CGACAATACTCTTGCCGCTTTCATATAAAAAAAACCACCAAAATTCCGAA