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Detailed information on CNT30117093


BLAST search results

BLAST vs Swiss-Prot:
sp|I4DST9|TCEA2_TULGE, E-value = 4e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694358Oryza nivaraOryza sativa58.7145.25100391forward
CNT30101967Oryza nivaraOryza rufipogon62.4655.99100416forward

Expression of CNT30117093

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MNSTLRSSSSTAWSEPAMPTKWNAWPTPLDSNSSTSPP*

>peptide 2 (48 aa)
SITPNDHISNQISINSTGITNYFVANNGRSHHNNMAKEKEKEKFPHLI*

Sequence

>CNT30117093
GTCTATAACGCCAAACGATCATATTTCGAATCAAATTAGTATAAATTCCACAGGTATTACAAATTACTTCGTGGCAAATAATGGTAGAAGCCACCACAAC
AATATGGCAAAAGAAAAGGAAAAAGAAAAATTTCCCCATCTTATTTAGATTAGACTAAACACGCTCCAAATCTGACTCCGCCGCCGGCGATCTTCATTTC
TTGATGAATTCGACGTTGCGCTCCAGCAGCTCGACGGCCTGGTCGGAGCCCGCCATGCCGACGAAGTGGAACGCGTGGCCGACGCCCTTGGACTCGAACA
GCTCCACCTCGCCGCCATAGCCGCTCGCCTTGAGCTCCCGGTGGTACCACAGCCCCCGCTCCTTGAGCAGGACGTCCTGCTCGGCCACGCACACCTGCAC
GCGCTCGCACGGGATCGCGGCGGCGGCGGCGCGCGTCGCGTCGTCGACGAACGGGTTCACGCGCGGGTCGTCCAGCCCGGACGTCTCCGGGAACACGAAC
CGCCATGTCCGGTCGAAGAACTCGCGGACGTCCGGGCCGAACGCCGCCTCGGCGCCCACGGCCTCCTTGCCGGTGAAGTAGGGCTGGAAGTCGAAGGCGA
CCTCGGAGTCGGGATCCATGGCGGATGGGGAGCGGTTGGTGGCCGGATCGGGAGACGGAAATGAGT