Detailed information on CNT30117076


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694484Oryza nivaraOryza sativa102.5795.7596.14518forward
CNT30554101Oryza nivaraOryza glaberrima99.878.7595.24504forward
CNT30140884Oryza nivaraLolium perenne19.2127.1790.7297forward
CNT30368472Oryza nivaraSorghum bicolor19.2122.7291.7597forward
CNT30370564Oryza nivaraOryza glumipatula90.8994.8395.21459forward
CNT30102264Oryza nivaraOryza rufipogon103.1776.1796.16521forward
CNT30576633Oryza nivaraOryza barthii89.990.6294.93454forward

Expression of CNT30117076

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MMMMMDRLTRHRLHPAIPKTIFNFISFRFENVTLENTSFKLPICSSVYP*

>peptide 2 (44 aa)
ADDNGKSNLGTSGSLTVETRHWLHHNTHQWRQQGALSVIGREKK*

Sequence

>CNT30117076
GCCGATGACAATGGAAAGAGTAATCTAGGTACAAGCGGATCATTGACGGTGGAGACAAGACATTGGCTGCACCACAACACCCACCAGTGGCGCCAACAAG
GAGCGCTATCCGTTATAGGACGAGAGAAAAAGTAAAACATCACGATGTGAAGTGAAACTGAATAATTCTAGTAGACGATGATGATGATGATGGATAGGCT
CACTCGTCATCGTCTTCATCCTGCAATCCCCAAAACCATTTTTAATTTCATCAGTTTCCGTTTTGAGAATGTCACACTTGAAAATACATCTTTCAAACTA
CCTATTTGTTCTTCTGTCTACCCATGAGACATTAGCCTCAAACTAACTATTGTTCTATATCTACCCATGAGGCATTAGCCTAATCAAAGTGTGAATCGTA
CTCCTAATCGTACAAGCCTCAGGCATAGTCAGCTAAGCTTCACACAACGAACTAATGCGATACTATTTTCCGAATTGATCACAAGGATTATGTATGTAGT
ACCTC