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Detailed information on CNT30117075

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691356	Oryza nivara	Oryza sativa	66.1	69.72	99.75	815	forward
CNT30519100	Oryza nivara	Juglans regia	68.37	82.81	96.09	843	forward
CNT30730407	Oryza nivara	Corchorus capsularis	68.45	89.31	96.56	844	forward
CNT3048148	Oryza nivara	Prunus dulcis	98.78	77.28	95.4	1218	forward
CNT30147369	Oryza nivara	Medicago truncatula	63.5	100.13	96.55	783	forward
CNT30665732	Oryza nivara	Triticum dicoccoides	58.31	44	98.33	719	forward
CNT30265842	Oryza nivara	Brassica rapa	46.88	100.35	96.02	578	forward
CNT30206551	Oryza nivara	Helianthus annuus	44.53	100.18	96.54	549	forward
CNT30369025	Oryza nivara	Sorghum bicolor	97	88.99	99.58	1196	forward
CNT30705843	Oryza nivara	Prunus avium	98.13	77.76	94.79	1210	forward

Expression of CNT30117075

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MMLSHANVSRAMACFEHSNFFKVTAPEARPGQLRPGAHRRQKGPTTSFLTATT*

>peptide 2 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDPEGQHNRTGIL*

>peptide 3 (37 aa)
PVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 4 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

Sequence

>CNT30117075
CCCCCGTCGCCGCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGTTGAT
GACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCA
AGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA
ACGGCCATAGTCCCTCTAAGAAGCTAGCTGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTCCACGCCTGGTGGTGCCCTTCCGTCAATTCCTTTA
AGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGT
CGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC
AGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCA
ACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGG
AGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGC
TGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACACTAAAGCGCCC
GGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC
TCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCG
CCGGCACGAGGGCCGTGTGTTCTTCTCCCTTCC