Detailed information on CNT30117067


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000869, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691288Oryza nivaraOryza sativa10046.7499.38481reverse complement
CNT30596367Oryza nivaraOryza meridionalis44.770.7298.14215forward
CNT30103630Oryza nivaraOryza rufipogon77.5576.7597.59373forward
CNT30551654Oryza nivaraOryza brachyantha13.9320.7494.0367reverse complement

Expression of CNT30117067

Peptides detected in this lncRNA

>peptide 1 (72 aa)
AAQLGYKPNVFSFWILFLQLRLIDYCKNEHMTYSTSHTANMQVHKDTKGWHNIGSFAKAAFSKTFKRSKTVE*

Sequence

>CNT30117067
GCAGCTCAACTGGGGTATAAGCCAAACGTCTTCTCCTTCTGGATCCTTTTTCTTCAACTGAGGTTGATTGATTATTGCAAGAATGAGCATATGACATACT
CAACAAGCCACACAGCAAATATGCAAGTGCACAAGGATACCAAAGGATGGCATAATATAGGCTCATTTGCAAAAGCAGCATTTAGCAAAACATTTAAGAG
AAGTAAAACAGTGGAGTAATTAATCAGAAATTTTAATCAACACTGAACAGCACACCCATGCTGCACAGGCCCAACCATCCTGAACAACCATACCCGGCTG
TACAGATCTAACTCCAAACCAGGAGCTAAGCAAATTATTACCAGGTATAACATCCATAATTATTGTGAGAGGTGTGAGACTAATCACGAAAAACATTGCT
CAACTCGCCCATAACCGCGGGCACGGCTATTCGAATAGTTTTACTCTGGCCAGAGGTGTACCACTGTACCCACAAGACACA