Detailed information on CNT30117001


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30308893Oryza nivaraTriticum aestivum44.352.8399.29700forward
CNT30588198Oryza nivaraMusa acuminata53.9910095.9853forward
CNT30444207Oryza nivaraAegilops tauschii81.397698.211286forward
CNT30656303Oryza nivaraTriticum dicoccoides51.979.2398.41820forward
CNT30599378Oryza nivaraFraxinus excelsior43.99100.1498.13695forward
CNT30719923Oryza nivaraTriticum spelta60.1962.3698.53951forward
CNT30369029Oryza nivaraSorghum bicolor80.2579.4599.681268forward
CNT30434125Oryza nivaraPapaver somniferum61.6586.1296.41974reverse complement
CNT30110310Oryza nivaraOryza longistaminata6083.2399.89948forward
CNT30497763Oryza nivaraDigitaria exilis51.8495.2399.76819forward

Expression of CNT30117001

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDPEGQHNRTGIL*

>peptide 2 (44 aa)
MRPSRKSGFVARISSRITTVIRVARTIKQTITDLMSHSQFHSSN*

>peptide 3 (53 aa)
MMLSHANVSRAMACFEHSNFFKVTAPEARPGQLRPGAHRRQKGPTTSFLTATT*

>peptide 4 (30 aa)
MMRRRHEGRAIRRVIMNHRISGRSPRQPFI*

>peptide 5 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

>peptide 6 (37 aa)
PVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

Sequence

>CNT30117001
CCCCCGTCGCCGCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGTTGAT
GACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCA
AGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA
ACGGCCATAGTCCCTCTAAGAAGCTAGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCAC
CCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACGC
CTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGT
CCTATAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTA
ATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCT
ATTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTGCTTTGAGCA
CTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGTCCAACTACGAGCTTTTTAACT
GCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACT
CATTCCAATTACCAGACACTAAAGCGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTG
GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGGCAGAAATTTGAATGATGCGTCG
CCGGCACGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGGATCAGCGGGCGGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGG
AAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGC
AGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATC