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Detailed information on CNT30116955


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84VG1|CHMP1_ORYSJ, E-value = 2e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Oryza nivaraSetaria viridis28.7710094.71227forward
CNT30513024Oryza nivaraJuglans regia49.6852.6281.89392forward
CNT30371693Oryza nivaraArabidopsis thaliana14.3220.8185.84113forward
CNT30306600Oryza nivaraTriticum aestivum12.9332.1897.06102forward
CNT3085000Oryza nivaraVigna radiata67.9319.0882.65536forward
CNT30554195Oryza nivaraOryza glaberrima89.9923.399.72710forward
CNT30254428Oryza nivaraAvena sativa41.4460.8993.88327forward
CNT30669382Oryza nivaraTriticum dicoccoides30.2940.196.23239forward
CNT3060118Oryza nivaraArabidopsis lyrata14.3238.4489.38113forward
CNT30141866Oryza nivaraLolium perenne69.289.893.41546forward
CNT30347540Oryza nivaraEragrostis tef78.8352.5888.42622forward
CNT30368840Oryza nivaraSorghum bicolor26.2457.6697.58207forward
CNT30370517Oryza nivaraOryza glumipatula49.5678.3698.98391forward
CNT30571602Oryza nivaraVitis vinifera51.9637.1783.17410forward
CNT30705067Oryza nivaraPrunus avium27.3822.1582.87216forward
CNT30111719Oryza nivaraFicus carica23.9520.9187.83189forward

Expression of CNT30116955

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MRLLTSVSGVESEVEPAMAPSMNSAWTSMLTNWRSKLSMVSDIFCRFPVASAESSDLTMLAMDLPMTCIFAWVSRREARRR*

>peptide 2 (63 aa)
MFPFSIAFFTLSFCSFSSFSHLRACRCSDLEVNLRSKIWVISFSGFPIAAADELAPIVDLARV*

Sequence

>CNT30116955
CCTGAAGTGAAATCCCTCAGCCGCGGGCCTTAAGCTCAGCCAGGCGGCGGGAGAGGTCGTCTTCATCAACAGCCTTCTCCTTCTCCTTGGCAGCTGGTAT
GGCGTGAGCGGCGGCCTGCGGCAACCCAACGGAGACCTCAAGGCCGTAGTCGTCGGCGACTTGCTGCATGAGGCTGTTGACCTCGGTCTCGGGCGTGGAG
AGCGAGGTGGAGCCGGCCATGGCGCCCTCCATGAACTCGGCCTGGACCTCCATGTTGACGAACTGGCGCTCGAAGTTGTCCATGGTCTCGGACATCTTCT
GCAGGTTCCCCGTGGCGAGCGCGGAGTCGAGCGACTTGACGATGTTGGCCATGGACTTGCCGATGACCTGCATCTTCGCCTGGGTGTCGAGGCGGGAGGC
GAGGCGGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATCCGCGCGCCGTCCATGTTCCCCTTCTCGATCGCCTTCTTCACC
TTGAGCTTCTGCTCCTTCTCCTCCTTCTCGCACTTGCGCGCCTGCCGCTGCAGCGACTTGGAGGTGAACTTGAGGTCGAAGATCTGGGTCATCAGCTTCT
CCGGGTTCCCCATCGCCGCCGCCGACGAGCTAGCCCCGATCGTGGATTTGGCTAGGGTTTGACGAGGAGGAAGAGGAAAGGCAGATCGGATTGGGGGATT
TGGGAACGCGTCGTATTTGCGAGGAGACGAGACGCGAATCGGGGATTTTTATTATTGGGGAGATGGGATTCGGTTCCGTTTGATTTGAT