Detailed information on CNT30116930


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109544Oryza nivaraOryza longistaminata35.741.8898.15433forward
CNT30101964Oryza nivaraOryza rufipogon99.5164.4899.251207forward

Expression of CNT30116930

Peptides detected in this lncRNA

>peptide 1 (96 aa)
SSPAHPTPSFWLLLLIVTCLLYSHPYYTYTQLLNFTGHSIFLTVIPRFFQIAGRRRAVERRAASGFCFLGVPGGRRWRWCARSDLNASGWQWLDNP*

>peptide 2 (65 aa)
MSPMPEIPHSFAAWSTGGLVNAAEGSSAGSGDATRCQPCGCLLGVSMSKRRSFILFCLIFNFVLQ*

>peptide 3 (74 aa)
KQSRTPHPLLLVAPPHSNLFTIQSPVLYIYSITKFYWPFYFSHGYSPFFPDRRSATGGRAAGGLRLLLPRRAGW*

>peptide 4 (37 aa)
MQLRAPPPAVGMPPDVSLVAVCLECQCRRGGASFFFV*

>peptide 5 (39 aa)
MSALWLSAWSVNVEEEELHSFLFDFQFRAPMICSSSLSR*

Sequence

>CNT30116930
AAGCAGTCCCGCACACCCCACCCCCTCCTTTTGGTTGCTCCTCCTCATAGTAACCTGTTTACTATACAGTCACCCGTACTATACATATACTCAATTACTA
AATTTTACTGGCCATTCTATTTTTCTCACGGTTATTCCCCGTTTTTTCCAGATCGCAGGTCGGCGACGGGCGGTCGAGCGGCGGGCGGCCTCCGGCTTTT
GCTTCCTCGGCGTGCCGGGTGGTAGGCGGTGGCGATGGTGCGCCAGATCCGATCTCAACGCCTCCGGATGGCAGTGGCTGGATAACCCCTGATTTTTTAC
TCCAATCGGAGGGGTGTGTTGCGGCCCTAGCAATTTGCCGGCGTTGTCAAGGCTCCCCTCCATGAACGGCAGCTCCATCTCCGCGTAGGCCCATGTCAAG
AGGCGCTGGAGGCAGATCGACGGCCTGATGATAGCGCATGTCTCCAATGCCAGAGATCCCTCACTCATTCGCTGCCTGGAGTACTGGAGGCCTGGTCAAT
GCAGCTGAGGGCTCCTCCGCCGGCAGTGGGGATGCCACCAGATGTCAGCCTTGTGGCTGTCTGCTTGGAGTGTCAATGTCGAAGAGGAGGAGCTTCATTC
TTTTTTGTTTGATTTTCAATTTCGTGCTCCAATGATCTGCAGCTCATCCCTATCTCGATGATTACATCTTCTCCCCGCAGTGAGTATTTCCGGCAGCGAT
TTCTTCTGTGTTCCTACGCCTAATAGAGATTTTTGGAATCGGGGAATTAGTACTAATATTTCCGTTTGATTCCACACCAGCCCATTCAGAGTCAATTTGT
GATGACCAAGTGGAGCCCCTTTCGTCTACTGTAGTTTGCGCAGTACCTCTCAGCTGAATCAGGATGTTTTTTTCATTAGATTTTTTTTTCTCCATTCTGC
AAGCGATTCGACCCTAACTCCAACAATTCAACTAATATAAATGGGTACACGAGCAATGGTGAATGAGCTCCTCTAAAACCAGATTAGGTCCACAAAATTC
CTGCATGTGTTTTTTTTTTTCATTCTGAACATAGCACTATGCAATCAATATCATGGATTTAAGTTAATTCACATATATATTGGTTTAGATTTAGTCAGGT
TTCGTGCAGGAGATCAAAAGAGGGATTATGAGTGGATCCAAAGGTTTAGTGTTGAGGAATCCAGAACACACTGTAGGCTACTGTCCCTAATTGTTGCTGC
GGCTTCAAATAGC