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Detailed information on CNT30116925


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694405Oryza nivaraOryza sativa83.9674.7197.09963forward

Expression of CNT30116925

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSDLLFHFSPCNFPFQPSCVYQFAKESKFYSNHPKIERTM*

>peptide 2 (59 aa)
MRSGIGATVRGAALGGRYPLFTHAIAQQECGGRKWMGIRVEVDCIAPIPVRVGFFGLIF*

>peptide 3 (31 aa)
GTKAFHSAVFPHPIPHRLKTRIQVFVFPRCK*

Sequence

>CNT30116925
AGGAACTAAGGCTTTTCACAGTGCAGTGTTTCCTCATCCCATTCCACATAGGCTGAAGACCCGGATTCAAGTTTTTGTATTCCCACGGTGCAAATAGCCT
CATGAGTGACTTACTTTTCCATTTCAGCCCCTGTAACTTTCCATTTCAGCCCTCATGTGTTTATCAATTTGCAAAGGAGTCCAAATTTTACAGCAACCAC
CCTAAAATCGAGAGAACAATGTAAATCTTCACCCACAAATACTACTTTATCCAAATCCCCCAACTACTACTCAGTCTCAACACCGGCTCTCTCCCCTCCT
CCCTCCGCCGGCGCTGGCTCTCCTTTCCTCTGGGCCGAGCGGCAGCGGAGGACGGCCTCTCCAGTTCTGGCTGAAGACGAGGGCGCGGAGGGCGGCGGCG
GCAGCGGCGCGAGAGCTCACTGGCCCCTCCTGGCCAAGACGGCGGAGCACGGCGTCGACGGGCTCGGCGTGCATGGCGGTGGCAGCTCAAGAACGGGCGG
CGAGGAGGAAGCGGGCGGGGTGAGCACTAGGTTGGGAGCCGCTGGAGGAGCCGCGCCGTCCACGCCGCTTGCTCCTCCCACGACTCCGGACCCCGCGGCA
CCGGCCGCCACCTGCTCATGCGACAGCCGCCGCCGCCGCTGCGAGGAGGAGGAGCATAAGCAAGAGGACGGCTGCTGCGATTTGTTGATTTGTTGCCGCG
AGGGCACGAGTGGGTGGGGCAACGCGCTCCACAGCACAGAAAAGCCGCCGTTTCCTCGCCTCGCGTGGGCTCGCGGCAGGGAGTAATCGCACTTCCCTCC
GCGGGAGCGAGGTCCTCTGCTGGGGCGCGGACCCTAGCGCCACGCAAGCTCGAATCCGACGTGTTGAGCTGGAGCACCGGTCCACGGTGTTGCACTGTAA
AGGGCCTAATGGGCGGCGCAGCGTTGGGCGCGACCGCATGAGGAGCGGCATTGGCGCGACCGTGCGAGGAGCGGCGTTGGGCGGTCGCTACCCATTGTTT
ACTCACGCGATTGCGCAACAGGAGTGCGGCGGCAGGAAATGGATGGGGATTAGGGTTGAGGTGGATTGCATTGCACCTATACCTGTTCGTGTGGGCTTCT
TTGGGCTGATCTTTTAATGGGCTTTCGTATTGCTGCTGGATAAAGGA