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Detailed information on CNT30116921


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y886|PLAS_ORYSI, E-value = 2e-60

BLAST vs NONCODE:
NONORUT005380, E-value = 2e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694005Oryza nivaraOryza sativa26.9531.09100180forward
CNT30673857Oryza nivaraSetaria viridis32.7832.1687.67219forward
CNT30226316Oryza nivaraHordeum vulgare14.5222.8291.7597forward
CNT30391539Oryza nivaraTriticum turgidum15.8738.9787.74106forward
CNT30443574Oryza nivaraAegilops tauschii41.1750.1892275forward
CNT30663028Oryza nivaraTriticum dicoccoides21.7130.8589.66145forward
CNT30141888Oryza nivaraLolium perenne41.1751.7991.27275forward
CNT3010819Oryza nivaraZea mays23.6542.3689.87158forward
CNT30368525Oryza nivaraSorghum bicolor31.4435.5988.1210forward
CNT30370409Oryza nivaraOryza glumipatula47.941.0898.44320forward
CNT30148503Oryza nivaraBrachypodium distachyon28.1460.0689.89188forward
CNT30102318Oryza nivaraOryza rufipogon47.951.61100320forward
CNT30583031Oryza nivaraEchinochloa crusgalli38.3229.5687.11256forward
CNT30557529Oryza nivaraPanicum hallii24.2577.5186.42162forward

Expression of CNT30116921

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MVSPDLTVKSFGSNTSTPPLERAAMVASVLYFFLVCVCVCVCVVLLWFSSSGAGVVVAINQSNDLSSG

>peptide 2 (31 aa)
SGRNRKTRYDMYMTQIINIDNISLNCSSHCY*

Sequence

>CNT30116921
TTCCGGGCGAAACCGGAAGACGAGATATGATATGTATATGACACAAATCATCAACATAGATAATATATCGTTGAATTGTTCGTCTCATTGCTATTGATAA
TTGATACACACTTGCATACACACAAGAGAAAACTGAGGAACAGATCATCGGTACGTAGTATATTCGCGATGGACAAATCGATATATATATATATATATAT
ATATAGGATAGAGCCGTAGGAGGCATATTTAGATTGAGAAGAAAGAATAATTAGTTGACGGTGACCTTGCCGACCATCCCAGCTCCGGCGTGCGGCTCGC
AGTAGAAGCCGTATGTGCCGGGGACGGTGAGCGTGACGGAGAAGGTCTCGCCGGGGGCGTTGAGGTACTCCTCCTGCGATATCTTGGACACGTCGACGCC
GCTCGGAACCGCGTCCTCGTCGAACACCACGTTGTGAGGGAAGCCGGCGTTGTTCTTGAACGTGATGGTCTCGCCGGACTTGACGGTGAAGTCGTTCGGC
TCGAACACCAGCACGCCGCCATTGGAAAGAGCGGCCATGGTAGCTAGTGTATTGTATTTCTTCTTGGTCTGCGTCTGCGTCTGCGTCTGCGTAGTACTCC
TATGGTTCAGCAGCAGCGGCGCCGGTGTAGTGGTTGCTATAAACCAATCCAATGATCTGAGCTCGGGT