Detailed information on CNT30116897


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Oryza nivaraOryza sativa61.0420.8298.63293forward
CNT30730376Oryza nivaraCorchorus capsularis38.3346.1288.04184forward
CNT30300556Oryza nivaraTriticum aestivum59.7916.7994.08287forward
CNT30539896Oryza nivaraBrassica napus38.7510.6785.48186forward
CNT30441515Oryza nivaraAegilops tauschii35.4226.4494.12170forward
CNT30363645Oryza nivaraSorghum bicolor44.3869.1694.84213forward
CNT30425595Oryza nivaraPapaver somniferum37.7130.9488.95181forward
CNT30109402Oryza nivaraOryza longistaminata60.8322.1798.97292forward
CNT30148380Oryza nivaraBrachypodium distachyon31.6711.2195.39152forward
CNT30100129Oryza nivaraOryza rufipogon60.8327.8197.95292forward
CNT30557406Oryza nivaraPanicum hallii43.5449.5394.74209forward

Expression of CNT30116897

Peptides detected in this lncRNA

>peptide 1 (48 aa)
ELSRVRIPLSPFAFLSLFFCVLNTFVSLFVFFFLSPYLSFIERNEWLG*

>peptide 2 (30 aa)
MQQPGLFLHATNGPQKRRILEQNGKSLTNF*

>peptide 3 (43 aa)
TIEGSNPSLSFCFPLSFLLRIEYVCFFICFFFSVPLSFFHRKE*

Sequence

>CNT30116897
GAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTTTCCTCTCTCTTTTCTTTTGCGTATTGAATACGTTTGTTTCTTTATTTGTTTTTTTTTTTC
TGTCCCCTTATCTTTCTTTCATAGAAAGGAATGAATGGCTCGGGTAGATAGAATAACCGAGCCAGAACAGAAAAAAACAGTAGAACAGGTATAAATAAGA
AAATCTTAGTTAAGAGGGGTCATGTAAAGAACAGGCTCCAAATCACGATCGATTCCCTTTTCAAATCCTGATGCAGCAGCCCGGGCTCTTCCTGCATGCC
ACAAATGGCCCACAAAAAAGAAGAATCCTAGAACAAAATGGGAAGTCGCTAACCAACTTCTAGGAGAAACATAATTAACTACATTGATCTCCAAAAAATT
CCAATTATTTAATATGAATAATTAGGAATAATTAGGATTAATTAATGAGTTTACTTTTATGTGTCGAATTCCTCGGTACA