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Detailed information on CNT30116883


BLAST search results

BLAST vs Swiss-Prot:
sp|P43214|MPAP2_PHLPR, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102178Oryza nivaraOryza rufipogon95.0550.4498.51403forward

Expression of CNT30116883

Peptides detected in this lncRNA

>peptide 1 (80 aa)
HLDVDATLIFRASRKAFGDDVINDTVAAVLDKEADGEGALECRLTLERPGVSRRLLERHPVLAALLLDLHLRDGDVGDEL*

>peptide 2 (63 aa)
MATLVTSSRLFPLEPSPTLKVTSVAHEPTTNNAATTTASQKEDNEAIGELASLLVLSFLFLEG*

Sequence

>CNT30116883
CACTTAGATGTTGATGCCACTCTTATATTCAGAGCCAGCCGTAAAGCTTTCGGGGATGACGTCATCAACGACACGGTAGCCGCCGTTCTTGACAAGGAAG
CGGACGGAGAAGGGGCCCTTGAGTGCCGCCTCACTCTTGAGCGACCAGGTGTTAGTCGACGACTCCTTGAGCGCCACCCAGTCCTTGCCGCCCTTCTCCT
TGATCTCCACCTCAGAGATGGCGACGTTGGTGACGAGCTCTAGACTTTTTCCGCTAGAGCCCTCACCGACCTTGAAGGTGACCTCAGTGGCGCATGAGCC
GACGACCAACAATGCCGCCACTACCACGGCGAGCCAGAAGGAGGACAACGAGGCCATTGGTGAGCTAGCTAGTTTGTTGGTGTTGTCTTTCTTGTTTCTT
GAAGGGTAGAGGGATGGATCGAGG