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Detailed information on CNT30116873


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END7|RK14_ORYNI, E-value = 6e-40

BLAST vs NONCODE:
NONOSAT001021, E-value = 3e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Oryza nivaraOryza sativa28.844.8199.5201forward
CNT30641762Oryza nivaraNymphaea colorata28.265.6886.29197forward
CNT30550215Oryza nivaraIpomoea triloba27.834.2484.02194forward
CNT30555950Oryza nivaraOryza glaberrima28.8413.2799.5201forward
CNT30147499Oryza nivaraMedicago truncatula21.819.6482.24152forward
CNT30243771Oryza nivaraAvena sativa28.4117.1795.96198forward
CNT30310337Oryza nivaraCamelina sativa21.388.9285.91149forward
CNT3083474Oryza nivaraBrassica juncea21.664.5284.11151forward
CNT30134355Oryza nivaraLolium perenne28.988.0293.07202forward
CNT30689031Oryza nivaraTriticum urartu28.843.698.01201forward
CNT30574575Oryza nivaraVitis vinifera27.8312.7185.05194forward
CNT3053857Oryza nivaraAmborella trichopoda22.5312.5285.35157forward
CNT30101666Oryza nivaraOryza rufipogon39.173998.9273forward
CNT30585636Oryza nivaraEchinochloa crusgalli28.263.4397.97197forward
CNT30604550Oryza nivaraOryza punctata22.387.1294.87156forward

Expression of CNT30116873

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LLCSEIERLRHYKQWKDKCNNPCSSLKKR*

>peptide 2 (40 aa)
MLGCTISNRCIVIIAYYYTVFAFELFTCTYNYSSNYFGSF*

>peptide 3 (85 aa)
MLKSEEKVIRLSKEKDQLLKERDAALQEAHMWRTELGKAREQAVVQEATIARADEKLRASEADAWVYYLKPLHCHHSVLLYRLRI*

Sequence

>CNT30116873
ACTTCTATGTTCAGAGATTGAGCGCCTAAGACATTACAAGCAATGGAAAGACAAATGTAACAATCCATGCTCAAGTCTGAAGAAAAGGTAATTAGATTGA
GCAAAGAGAAGGATCAATTGCTGAAGGAAAGAGATGCTGCACTTCAGGAGGCTCATATGTGGCGCACTGAGCTAGGGAAAGCTAGAGAGCAAGCAGTGGT
ACAAGAAGCAACTATTGCCAGAGCAGATGAGAAGTTAAGGGCATCTGAAGCAGATGCTTGGGTGTACTATCTCAAACCGCTGCATTGTCATCATAGCGTA
TTATTATACCGTCTTCGCATTTGAACTCTTTACATGTACGTACAATTACAGCTCGAATTACTTCGGATCTTTCTAGAGGCATTTGGGGCACTGCGTCTTT
GATTACAGCAACAATAACATCACCAATACGAGCATATCGCTGATTACTAGCAGCTCCTATGACTCGAATACACATTGCTATCTGCTATTCTGCTGTAGTA
GTGCCTGACTAAAAACCTATTGTGTCAGTATATTCTGCCCTATCGAATGTAAGTAAGATAACAAGATCTGATATGTGCTCGTGTCTTAAGTGCTGGTGTC
ATGTATAAGTGTGATCAGGGCATGGTAGGCTCATGTAATGATGGTTACTGCTGCTATTCTCGTGTCAAAGCTTTGATAGCCTGTTAACGTGTGGAAC