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Detailed information on CNT30116872

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693516	Oryza nivara	Oryza sativa	74.63	92.23	99.43	700	reverse complement
CNT30553784	Oryza nivara	Oryza glaberrima	87.95	58.1	99.15	825	reverse complement
CNT30108234	Oryza nivara	Oryza longistaminata	49.25	48.07	94.16	462	reverse complement
CNT30101813	Oryza nivara	Oryza rufipogon	26.76	53.75	100	251	forward
CNT30576369	Oryza nivara	Oryza barthii	87.95	45.91	99.39	825	reverse complement

Expression of CNT30116872

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPLTIPRSMRESDIAGSAHKSLSLLDLPARAPAAARALAAAGSAC*

>peptide 2 (47 aa)
MAPAATAVRALAATGSACESTHRWIRLLEPLLLPDVLARAPTAGSAC*

>peptide 3 (29 aa)
MCSQEHPPLDPPARALAVAGFARESTKHH*

Sequence

>CNT30116872
TGTCGGATTAAGAACATACCTATATGAGTTGTACGACTCAATTAAAAAAATACAGGCTTAGCTCAATTCAAGCTGATGCTTTAAATAAATAAACATTTTT
TAAAAAACAAAGAAGCCACAAGTTCACGTCACAATCGAACATTCATCGCTCAACATCCGAGAACCGAAGTACACAAGCACATCATCATAGAATCAATCAC
ACAATACACTAATCGCAACACCTAAGCCGCCATCATAGTGGAGAACTCCGCCCGTTGCCATAGCTCGCTGGGGAGGGCTTCGATGCCACTTACCATCCCT
AGGTCCATGCGAGAGAGCGACATCGCTGGATCCGCCCACAAGTCATTGTCACTGCTGGATCTGCCCGCAAGAGCACCCGCCGCCGCGAGAGCCCTTGCCG
CCGCTGGATCCGCCTGCTAGAGCCCTTGCTGCCACCAGATCAGCCCACGATGGCACCCGCCGCCACCGCCGTGAGAGCCCTTGCCGCCACTGGATCGGCC
TGCGAGAGCACCCACCGCTGGATCCGCCTGCTAGAGCCCTTGCTACTGCCGGATGTGCTCGCAAGAGCACCCACCGCTGGATCCGCCTGCTAGAGCCCTT
GCTGTTGCCGGATTTGCTCGTGAGAGCACCAAACACCACTAGCGCTCGATCCGCCTGTTGCTGCCACCTCCGGATCCATGCAGTTGTTGATGCTGGTCGT
TAACAGCAGTATGCCGACGAGCTCAAGGAATTATTGATTGGGAGCATGCCAAGGCACCATCGAGAGGGAGGAGGCACGACGTAGGGGGAGATGAGGGGTT
GTGGCGGAGGCGGTGGTGGCTCGTGGAGCAGGGATTGGGGAGATGGGAGAGGGAGAGAGTAGGGGGAGAGGAAGTGAGCGAACGTAGAGCCGTGGAGGTG
AGGGAAGCCGGTTTTTTCCTCCACCCACTCGGCTAGGC