Detailed information on CNT30116862


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30665401Oryza nivaraTriticum dicoccoides64.6686.185.63675forward

Expression of CNT30116862

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKAPPGYTLSRPSPSGPPPTR*

>peptide 2 (75 aa)
MASAPRTGPDALGRALDGAAHGDAATGVADAADELIPARGGAEEAGGLVQRRRGHRSNEGDAAAVGLVFCGVWWRW

>peptide 3 (66 aa)
MLWGALLTVRRMVMRPPESPTRRTSSSRRGAVPRKLVVWCSADAAIVLTRAMRRRLGWFFVVCGGDG

>peptide 4 (54 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCSRWGPCR*

>peptide 5 (35 aa)
SWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

Sequence

>CNT30116862
TAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAG
CAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACACAATTAAGGTACATACATACATGCACTGCTGC
AACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGAC
GAAGTTGGTGGCGTATGCCCAGGCGTTGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGG
CCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCGCCGCCTGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCT
CGACGAATCCCATGAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGA
GAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATT
GCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACT
CTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAGATGCTCTGGGGCGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCACCGGAGTCG
CCGACGCGGCGGACGAGCTCATCCCGGCGAGGGGCGGTGCCGAGGAAGCTGGTGGTCTGGTGCAGCGCCGACGCGGCCATCGTTCTAACGAGGGCGATGC
GGCGGCGGTTGGGTTGGTTTTTTGTGGTGTGTGGTGGAGATGGG