Detailed information on CNT30116861


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693936Oryza nivaraOryza sativa19.3121.6399.06106forward
CNT30521132Oryza nivaraSetaria italica21.6817.4289.92119forward
CNT30553839Oryza nivaraOryza glaberrima79.2379.23100435forward
CNT30596215Oryza nivaraOryza meridionalis32.7935.6498.33180forward
CNT30370219Oryza nivaraOryza glumipatula77.7844.4398.36427forward
CNT30101862Oryza nivaraOryza rufipogon81.4246.2795.97447forward

Expression of CNT30116861

Peptides detected in this lncRNA

>peptide 1 (30 aa)
WSQYGSCPKLNPRTGSLQEIKKIQRKQERN*

>peptide 2 (58 aa)
HGHSTVLVQNLIQEPDLFKRSKKSKENKKETSRRMKKKSRSNQLEAGDGVLGRRAMSS*

>peptide 3 (32 aa)
MRRRRTSRGRQRRRSGNGGGGARSTSSEYGER*

Sequence

>CNT30116861
CATGGTCACAGTACGGTTCTTGTCCAAAACTTAATCCAAGAACCGGATCTCTTCAAGAGATCAAAAAAATCCAAAGAAAACAAGAAAGAAACTAGTAGGA
GGATGAAAAAGAAATCAAGATCTAATCAATTAGAGGCTGGAGATGGTGTTCTTGGGAGGAGGGCGATGAGTTCATGAGAAGACGTAGAACCAGTAGAGGA
AGGCAACGGAGAAGGAGTGGGAACGGCGGCGGCGGAGCACGTTCAACTTCATCGGAGTACGGCGAACGTTAGAGGAAAGGATAGGTAAACATTCCCCAGA
TCGGATCTACGCCACCAACCTCAACCTCGAGCAAGAACAAGAACAGCAACGAGAGGGAGTGGAAACTAAAATTCGACCAACCCGAGGGGCTTCCTCGCAA
GAATGCAAGGAGTAGACTCGAAAGGAAAAGAAACTAGGAGGACCTGAATGTAATAAAAAGATGGGAACCAAGGACTTATCTGCGAAACAGAGGGGACTCC
GGGGGCTCTAATGCATAAGGGGCGCAATTAGACGGATGGGGAAGGTTTA