Detailed information on CNT30116859


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH2|RR4_ORYNI, E-value = 4e-95

BLAST vs NONCODE:
NONORUT000576, E-value = 1e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618959Oryza nivaraSesamum indicum92.096.185.94384forward
CNT30197932Oryza nivaraPisum sativum68.1112.4685.92284forward
CNT30185413Oryza nivaraSecale cereale99.7621.7294.95416forward
CNT30292655Oryza nivaraTriticum aestivum99.5220.5295.66415forward
CNT30237795Oryza nivaraBrassica oleracea68.117.487.68284forward
CNT30655373Oryza nivaraRosa chinensis68.116.7888.38284forward
CNT30626868Oryza nivaraDaucus carota60.1948.8388.84251forward
CNT30596981Oryza nivaraOryza meridionalis55.1673.9584.78230forward
CNT3024956Oryza nivaraPopulus trichocarpa20.8615.7985.0687forward
CNT30114189Oryza nivaraFicus carica68.117.2189.79284forward

Expression of CNT30116859

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKTQFLFFLKTNTILFFFPRMEFLFQITSGFRCFSSESW*

Sequence

>CNT30116859
AGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTTCGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGTTCATTA
ACTAAAATATGTCTATGGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCATACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATT
GTAGTAAAACCTGACCTGTTGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATGAAAACGCAATTTCTG
TTTTTCTTGAAGACGAATACGATATTGTTCTTTTTTCCCAGAATGGAATTTCTTTTTCAGATTACTTCCGGATTTAGGTGTTTTTCTAGTGAGTCCTGGT
AAAGCTCCCAGACGGCG