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Detailed information on CNT30116857


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693744Oryza nivaraOryza sativa85.110098.2611forward
CNT30553632Oryza nivaraOryza glaberrima52.9236.2698.68380forward
CNT30370371Oryza nivaraOryza glumipatula39.5543.7694.72284forward
CNT30576330Oryza nivaraOryza barthii52.9241.3998.68380forward

Expression of CNT30116857

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MNSARFRRFTGELEHRLPEQSIVSSSPPLIKRLAAELELMHGSARAN*

>peptide 2 (45 aa)
NPLIPSLPQQKASSLSMLQIYYYYNKIKIPHLDLDELRQIPPLYG*

>peptide 3 (45 aa)
MMMMMGQKYHPRMRTYRMFLYSAIVMALVQESGVHHGAKIWESSC*

Sequence

>CNT30116857
GTAATCCCTTGATCCCTTCCCTCCCCCAACAGAAGGCATCGTCTCTCTCCATGCTGCAGATCTACTATTACTACAACAAAATAAAAATTCCCCACCTTGA
CCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCACCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCG
CCTTGCCGCTGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAAAGTGCATGAGCTTGGATCGAGAAGGTCCATG
ATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCACCCATCAGAGGGATCTGTGGAC
TCAGCAGGATTTGATAATGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTG
GTTCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCAATCTGTGTAGATGAAAATAAAACAACTGTGTATT
TGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCATATTTTTGTTAGCGCTTAAATTGCGTTGTTTCCAATTTAAT
TGTGATAGTATAACATGG