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Detailed information on CNT30116852


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693865Oryza nivaraOryza sativa10093.9199.491188forward
CNT30528977Oryza nivaraEucalyptus grandis75.9367.3185.81902forward
CNT30306465Oryza nivaraTriticum aestivum56.473.7987.76670forward
CNT30553671Oryza nivaraOryza glaberrima96.8998.9799.651151forward
CNT30461176Oryza nivaraSaccharum spontaneum77.8627.1386.16925forward
CNT307928Oryza nivaraZea mays77.6977.4386.46923forward
CNT30368619Oryza nivaraSorghum bicolor76.5278.7785.48909forward
CNT30370352Oryza nivaraOryza glumipatula97.6497.9798.791160forward
CNT30706353Oryza nivaraPrunus avium75.6750.9384.2899forward
CNT30576485Oryza nivaraOryza barthii77.8699.2597.08925forward
CNT30583684Oryza nivaraEchinochloa crusgalli54.9731.1188.06653forward
CNT30593897Oryza nivaraEragrostis curvula77.6182.186.66922forward
CNT30604138Oryza nivaraOryza punctata56.5779.4395.83672forward
CNT30174646Oryza nivaraVigna angularis73.5783.8885.7874forward

Expression of CNT30116852

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSRVIVLPVRVLTKICIPPLRRRTR*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKICICKNVYQPW*

>peptide 3 (47 aa)
MTQQMFGQQYSTFKRTRWSTNSTNKVFTRIMQTQDNSTAAIPSINDY*

>peptide 4 (37 aa)
MVSELSTSRVMVLPVRVLTKICIPPLRRSTKCRVDSF*

Sequence

>CNT30116852
GTAGGCAAATTTGAATGAAGAGTTGTAATGGGTGCAGAACTATAAGCAAATTTAGCAACGCAGATTAATAGTTTACTTATTAATTAGTTTAAACTGCTAT
GACCCAGCAAATGTTCGGACAGCAGTACAGCACATTTAAACGGACTCGATGGTCCACTAACAGCACAAATAAAGTTTTCACGAGGATAATGCAGACACAG
GATAACAGTACAGCAGCAATTCCATCAATCAATGATTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGG
CGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTC
GATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATACCACCCCTGAGGCGGAGCACCAAGTGTAGG
GTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCT
TATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATTCC
ACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGA
CGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAG
TCAAGGTCTTGACAAAGATTTGCATGCCTCCCCGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATC
TTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGAC
TCAACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATCTGCAAGAATGTATATCAACCATGGTAAGTCTCCA