Detailed information on CNT30116840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000582, E-value = 1e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695398Oryza nivaraOryza sativa61.9326.199.13231forward
CNT30370846Oryza nivaraOryza glumipatula61.6676.9297.83230forward
CNT30110157Oryza nivaraOryza longistaminata61.9356.6291.34231forward
CNT30103210Oryza nivaraOryza rufipogon64.0866.298.33239forward
CNT30578597Oryza nivaraOryza barthii59.2598.2297.29221forward
CNT30604527Oryza nivaraOryza punctata54.9665.0889.27205forward

Expression of CNT30116840

Peptides detected in this lncRNA

>peptide 1 (46 aa)
FIINSFEVRMRPFKSHNSSKIMIYMFVYFLCTVYLVFISLFLRFAC*

Sequence

>CNT30116840
ATTCATAATAAATTCATTTGAAGTCAGAATGAGGCCGTTCAAGTCTCATAATTCATCTAAAATTATGATCTACATGTTTGTTTACTTTTTATGTACTGTT
TATTTGGTTTTTATTAGTCTTTTTCTTCGTTTTGCGTGTTAGCTTGTCGTTTCCGTCGTTGCGAAGGTTCGTGAGTGCGTCGGAAGTGATCAAGAAGATT
AATTGAAGACCGATTATTGCAAGTTGAAGATAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAG
CCATCGCTAGACCGTTAATTCCGCTGCTGTTTTCTTTTCTTTTGTAAGTATGTAACGTTATTATTATGATGGG