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Detailed information on CNT30116839


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693848Oryza nivaraOryza sativa99.2275.6999.68632forward
CNT30101654Oryza nivaraOryza rufipogon99.8499.6999.69636forward
CNT30576360Oryza nivaraOryza barthii75.9810099.59484forward

Expression of CNT30116839

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTIYMVHMYKYSAINMNWTRTESLFLALNIYFYNLRYHLLP*

>peptide 2 (30 aa)
KRFQSFVNCYKNLCVCTSLCLSPLSHREKN*

>peptide 3 (31 aa)
MSISIEKGRQRSKRSELKRYSVPHFLLLPFP*

Sequence

>CNT30116839
AAAAGGTTTCAGTCATTTGTTAATTGCTACAAAAACCTGTGTGTGTGCACTTCTTTGTGTTTATCTCCATTGAGCCATAGAGAGAAAAACTGAGTGCGCG
TGCGTCGCCATTGTCGTGTCCACTACAATTTGCCACTTGTGCGTGTGTGCCATCGCTTGAGTTCGCTGCTCGCCGCGGAGCCTAAGTCAGGACTAGTCAT
ACTGACATGCCAAGAGAAGACTGAAGCGAATCATGCATGAAGCGAAGCAATCGCTGATCCTGACATTGTCCCTGCCGGCAGAACATGTTCTCTGATACCT
CCTATGTCTATTTCAATCGAGAAAGGAAGGCAGAGAAGTAAAAGAAGTGAATTAAAAAGGTACTCTGTTCCTCACTTTCTCCTTCTGCCATTCCCATAAG
AATCACCAAATAACATGGAATTCAGGCAGTGTTGGTTACTCTCTGTCAATGACCATATATATGGTCCATATGTATAAATACTCGGCAATCAACATGAACT
GGACAAGGACTGAGTCATTGTTTTTAGCCCTTAACATTTACTTCTACAACTTAAGGTACCATCTTTTGCCATAACGAAGAACTTAAGACTCCATTTTAAA
GGAAGATCAAGGGGCAAGACATTGAACCTTTTGTGTG