Detailed information on CNT30116812


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT301235Oryza nivaraZea mays35.216.1685.3375forward
CNT3099522Oryza nivaraOryza rufipogon24.416.388.4652forward
CNT30576520Oryza nivaraOryza barthii36.6223.4998.7278forward
CNT30604472Oryza nivaraOryza punctata27.234.0987.9358forward

Expression of CNT30116812

Peptides detected in this lncRNA

>peptide 1 (69 aa)
VVVVVAVVQEDGGVAGGVDDDVGAGDHARAPLLHRRLDLVDELERGEADVDRRRLLRVRVLRRRVQQHRR

>peptide 2 (51 aa)
MTMSAQETTPGHRSSTAALISSMSSNAARPMLIGAVFSVCGFSGVGSSSTDA

Sequence

>CNT30116812
AGGTTGTTGTGGTAGTAGCTGTTGTCCAGGAGGATGGAGGCGTCGCGGGCGGCGTAGATGACGATGTCGGCGCAGGAGACCACGCCCGGGCACCGCTCCT
CCACCGCCGCCTTGATCTCGTCGATGAGCTCGAACGCGGCGAGGCCGATGTTGATCGGCGCCGTCTTCTCCGTGTGCGGGTTCTCCGGCGTCGGGTCCAG
CAGCACCGACGCG