Detailed information on CNT30116778


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENY0|PSBC_SACOF, E-value = 3e-88

BLAST vs NONCODE:
NONORUT004583, E-value = 2e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196267Oryza nivaraPisum sativum65.3538.5388.6430forward
CNT30284073Oryza nivaraTriticum aestivum68.3914.2996.67450forward
CNT30563336Oryza nivaraActinidia chinensis17.4856.9391.3115reverse complement
CNT30236105Oryza nivaraBrassica oleracea66.5753.3590.41438forward
CNT30257701Oryza nivaraAvena sativa68.3964.8496450forward
CNT30628236Oryza nivaraDaucus carota68.2441.3190.65449forward
CNT30367840Oryza nivaraSorghum bicolor29.3342.9896.89193forward
CNT30148338Oryza nivaraBrachypodium distachyon15.524.8897.06102forward

Expression of CNT30116778

Peptides detected in this lncRNA

>peptide 1 (60 aa)
RFWDRRLLKNLFHSLVMCGKIEIKCHRSLRLRRKLDKVLQIQSTEKYLELLPRALLPNLE*

>peptide 2 (35 aa)
LLGPETLEKSFPFFGYVWKDRNKMPPKPKTAEEIR*

Sequence

>CNT30116778
CGCTTCTGGGACCGGAGACTCTTGAAAAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGCCACCGAAGCCTAAGACTGCGGAGGA
AATTAGATAAAGTACTCCAGATACAAAGTACGGAAAAGTATCTAGAACTTCTCCCCCGGGCCCTACTCCCCAACCTAGAGTAGCTAAGTGCGGAAGTAAA
ATCAACCCTTGTTCATACATGGGTTTTTCTGGTACGAAATGGGCCACTTCAAATAGGTTCATTGCTCCGGCCCAGAATACGATTAATCCTGCATGGGCTA
CGTGAGCTCCAAGTAGTTTACCCGACAAATTGATAAGTCTGGCATTCCCGGCCCACCAAGCAAAACCGGTGGTTTCTTGGTCACGACCAGCTAAAACAAA
AGTTCCATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCCTGAGCTGCCATCCACGCACGAATACCCTC
GTTTAAAAGAATATTTTTGCCGAGGTCGTGGTAAATCCATGAATTTGATTCAATTAGTTTTTCTTATACTATAGAAATAAACATTGGAATTCAGGATTAT
TCCATGATTCCTATTTCCAAGAAAGCCTATTTTTTAAGGGAAAAATGAAAAAAAGTAA