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Detailed information on CNT30116770


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Oryza nivaraOryza sativa10093.6499.571398forward
CNT30674319Oryza nivaraSetaria viridis58.882.4587.59822forward
CNT30641270Oryza nivaraNymphaea colorata81.8357.2982.61144forward
CNT30526024Oryza nivaraPhaseolus vulgaris63.1666.7484.26883forward
CNT30191758Oryza nivaraSecale cereale78.1871.7786.091093forward
CNT30305252Oryza nivaraTriticum aestivum60.899.5385.06850forward
CNT30226205Oryza nivaraHordeum vulgare69.3193.985.96969forward
CNT30242826Oryza nivaraAvena sativa64.4572.0888.24901forward
CNT30669573Oryza nivaraTriticum dicoccoides47.4267.5888.99663forward
CNT30311152Oryza nivaraCamelina sativa78.968.3882.51103forward
CNT30140803Oryza nivaraLolium perenne82.1964.1987.291149forward
CNT30229013Oryza nivaraAnanas comosus81.6972.4284.061142forward
CNT3067522Oryza nivaraLeersia perrieri64.5272.9884.81902forward
CNT30653057Oryza nivaraRosa chinensis65.2468.9384.32912forward
CNT30716337Oryza nivaraMalus domestica golden75.9785.7184.561062forward
CNT30684712Oryza nivaraTriticum urartu81.9744.7887.611146forward
CNT30722465Oryza nivaraTriticum spelta59.5173.6988.46832forward
CNT30348745Oryza nivaraEragrostis tef79.3399.8285.121109forward
CNT30596296Oryza nivaraOryza meridionalis96.2897.7595.251346forward
CNT30110940Oryza nivaraOryza longistaminata88.745.7296.771240forward
CNT30150301Oryza nivaraBrachypodium distachyon47.7147.2488.76667forward

Expression of CNT30116770

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSRVIVLPVRVLTKICIPPLRRRTR*

>peptide 2 (48 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKICICKNVY

>peptide 3 (47 aa)
MTQQMFGQQYSTFKRTRWSTNSTNKVFTRIMQTQDNSTAAIPSINDY*

>peptide 4 (44 aa)
MPSLSWIFAFTLSIVSDDSTSSVMVLPVRVFTKICIPPLRRRTR*

>peptide 5 (37 aa)
MVSELSTSRVMVLPVRVLTKICIPPLRRSTKCRVDSF*

Sequence

>CNT30116770
GTAGGCAAATTTGAATGAAGAGTTGTAATGGGTGCAGAACTATAAGCAAATTTAGCAACGCAGATTAATAGTTTACTTATTAATTAGTTTAAACTGCTAT
GACCCAGCAAATGTTCGGACAGCAGTACAGCACATTTAAACGGACTCGATGGTCCACTAACAGCACAAATAAAGTTTTCACGAGGATAATGCAGACACAG
GATAACAGTACAGCAGCAATTCCATCAATCAATGATTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGG
CGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTC
GATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATACCACCCCTGAGGCGGAGCACCAAGTGTAGG
GTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCT
TATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATTCC
ACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGA
CGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCTGATGACTCAACCTCAAGCGTAATGGTCTTGCCAG
TAAGGGTCTTCACGAAGATCTGCATTCCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATC
CTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGAC
TCAACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATGCCTCCCCGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGA
TGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGC
CTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATCTGCAAGAATGTATATC