Detailed information on CNT30116758


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000026, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597133Oryza nivaraOryza meridionalis37.9714.9991.98374forward
CNT30110249Oryza nivaraOryza longistaminata46.660.1695.64459forward
CNT3099616Oryza nivaraOryza rufipogon54.2196.5694.01534forward

Expression of CNT30116758

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVVVTVAMPISAAGISSASSSLSRPTRTSSEI*

>peptide 2 (82 aa)
MLWSAHWTPSSGSRRRFDRTEHPKPNSCATRIASTSSSKALKNPSQFRNDEGDRRLLPQVRPPTTVVDSLIPGELRRNSSLV*

>peptide 3 (71 aa)
SKPRGRAPAFLFHLDLAAGREDDGRRHRHCTPRERRARRRCSGARTGRRRRVLVVVLTEPNTPSRTLAPPG*

>peptide 4 (56 aa)
ANRGGELRLFFFISTLPPAVKTTAVAIAIVPHENAELADDALERALDAVVGFSSSF*

>peptide 5 (42 aa)
MTARSPDGGCYRCHADFRRGDILCIIVTIQAYPYLVRDLIIA*

Sequence

>CNT30116758
AGCAAACCGAGGGGGAGAGCTCCGGCTTTTCTTTTTCATCTCGACCTTGCCGCCGGCCGTGAAGACGACGGCCGTCGCCATCGCCATTGTACCCCACGAG
AACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCGTCGGGTTCTCGTCGTCGTTTTGACCGAACCGAACACCCCAAGCCGAACTCT
TGCGCCACCAGGATAGCCTCGACGTCCTCTTCGAAAGCCCTCAAGAACCCCAGCCAGTTCCGCAACGACGAGGGAGATCGGCGTCTTCTTCCTCAAGTCC
GGCCGCCGACCACCGTCGTTGATTCCTTGATCCCGGGTGAGCTTCGGCGCAATTCCTCACTCGTGTAGCATCTTTAGATGATCGTTGAGCCGTTCCACTC
TTTTTCATGACAGCTCGAAGTCCGGATGGTGGTTGTTACCGTTGCCATGCCGATTTCCGCCGCGGGGATATCCTCTGCATCATCGTCACTATCCAGGCCT
ACCCGTACCTCGTCCGAGATTTGATAATTGCTTAATCGGTGAAGAAGTGAATTAGGTGCTGACATTTTCCAAATTGAAGGCAAGTCCCACCTCCCTCTCT
TTGATCACATTGAACCTATGTTTTGGAGGTTATTGAAAATGTTTGCAAATCTTGCATGTCGATTGTACACTAATAAATTAAAATTTTGTTAAACTTGATA
GACAAACTCATACTACTTGCATTATCATCTTAACTGCACATATATCCATATCCCTCATTCCTAACCTTAGGAACAATATGACTATACCACTTTATATATG
AGTTTTGGTGACACTAGGTTACTACAAAGCTTAGCCATGCTTAGAATGGTCTTCCTTGTCATTATGGGCTCATTACAAACATGAAAATTGATTTTTAAAT
AATCTTGACAGAACTTTAATACTTGTGATTTTGATAAATAAAATGGTGGAAAACATGGATTTTAGGTTTGGGCCTTAAGTGGTGC