Detailed information on CNT30116754


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553647Oryza nivaraOryza glaberrima97.9197.8299.631079forward
CNT30370201Oryza nivaraOryza glumipatula10090.8599.551102forward
CNT30101746Oryza nivaraOryza rufipogon96.199.3496.981059forward
CNT30604109Oryza nivaraOryza punctata100.54100.8292.871108forward

Expression of CNT30116754

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQ

>peptide 2 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 3 (78 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCSSDLCYWRFCRSQFDDGC*

>peptide 4 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

>peptide 5 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

Sequence

>CNT30116754
CCAAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAA
AATCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAACAACCTTCACCCCGCACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGG
ACTCACAGTCCTGTAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGA
TGATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGA
TCAAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTCTCCCATGGTGCCA
TTCCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAA
ATTTCTGGGATGACCAGTTGCTGCTCCTCAGATTTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGAAAA
CTACACTGGATGCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTGATT
GAAGTCCTGGAAACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTAATTCAGGTTCAGCATTTGAGTTTAGG
TAGTAGCATACATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGGTGA
AGCATGGCAACATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAATCA
AG