Detailed information on CNT30116753


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005034, E-value = 6e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Oryza nivaraSetaria viridis9820.9896.18393forward
CNT30272810Oryza nivaraChenopodium quinoa27.6829.8492.79111forward
CNT30708350Oryza nivaraGlycine max50.3725.2886.14202forward
CNT30556102Oryza nivaraOryza glaberrima97.7664.05100392forward
CNT30610339Oryza nivaraGossypium raimondii68.8382.8886.59276reverse complement
CNT30717508Oryza nivaraMalus domestica golden20.4510.1686.5982forward
CNT30627901Oryza nivaraDaucus carota90.5231.0392.29363forward
CNT30595932Oryza nivaraOryza meridionalis27.188.299.08109forward
CNT30646246Oryza nivaraCannabis sativa57.6178.3189.18231reverse complement
CNT30318962Oryza nivaraAsparagus officinalis9818.8593.13393forward
CNT30148621Oryza nivaraBrachypodium distachyon28.9329.9100116forward
CNT30575379Oryza nivaraOryza barthii78.0572.6296.81313reverse complement
CNT30726606Oryza nivaraLupinus angustifolius92.2731.3889.19370forward

Expression of CNT30116753

Peptides detected in this lncRNA

>peptide 1 (55 aa)
SSSVLLPLLPLTMASPWEITPMGRKRKALRDPPGPTLDTLRSFFKPALLPFRVKR*

>peptide 2 (57 aa)
FKCASSPSPPYHGKSLGNNSDGQKKEGVKRPSWPNPRHSKILFQTCSAPISSQEIDK*

Sequence

>CNT30116753
TCTTCAAGTGTGCTTCTTCCCCTTCTCCCCCTTACCATGGCAAGTCCTTGGGAAATAACTCCGATGGGCAGAAAAAGGAAGGCGTTAAGAGACCCTCCTG
GCCCAACCCTAGACACTCTAAGATCCTTTTTCAAACCTGCTCTGCTCCCATTTCGAGTCAAGAGATAGATAAATAGCCACATCCCATTGCACTGATCGAG
GGCGCTCGTAGTGACTTAGGGAGTCGAAGACCAAGAAGTGGCTTATTTATACCAAGCATTCCTCTTATGGCTAGATCCAACCTCCTGGTCCCTGCGGAAA
GGAAAAAGAATTTCACGTTCTTCCTTTCAGGAAGGGAGGATTAGGGAAGTCCTATTGATTGCTGCTTTCTCCAGACCGCCGGGAAAAGCATGAAAAAAAG
G