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Detailed information on CNT30116751


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553623Oryza nivaraOryza glaberrima30.6369.32100174forward
CNT30370373Oryza nivaraOryza glumipatula46.6569.19100265forward

Expression of CNT30116751

Peptides detected in this lncRNA

>peptide 1 (36 aa)
QHRIGSFTTYIAIGIVQLYQHHKQGELIHGDPAMGD*

>peptide 2 (44 aa)
MYLRVVRQSARGDGLTASFLPEMELPARDAIAAVNSREDAKLSR*

>peptide 3 (78 aa)
MSVLKIEHGISGLKPHTPLATAISSASLLLLAYSSYVPAGGAAERPGRRPDGELPAGDGAAGEGRHCCGEFAGGRKAE*

>peptide 4 (33 aa)
MAIRPWGTSSTVQRICMDGSDQEEGEAETRNLI*

Sequence

>CNT30116751
TGCAGCATCGAATTGGATCCTTTACAACTTATATAGCCATAGGAATAGTACAATTATATCAACATCATAAACAGGGGGAATTAATCCATGGCGATCCGGC
CATGGGGGACTAGCAGTACAGTACAGAGGATTTGCATGGATGGATCGGATCAAGAAGAAGGTGAGGCAGAGACGAGGAATTTAATTTAGATCTTGCCGCG
TGGGCCGGGCGTCGAAGTAGACGCTCTTCTCGCCGTACTTGGCCACCACGGCGGCGCGCGGCCTGTAGCAAGAAGAAATTATGAGCGTGTTAAAAATTGA
ACACGGGATCTCGGGATTGAAACCACATACACCTCTTGCCACTGCAATATCAAGTGCATCTCTACTGTTACTCGCGTACTCCTCGTATGTACCTGCGGGT
GGTGCGGCAGAGCGCCCGGGGCGACGGCCTGACGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGCGAGGGACGCCATTGCTGCGGTGAATTCGCGGGAG
GACGCAAAGCTGAGTAGATAGATGGATAGATAGCCGGTGTACTATCTGCGGCGGCGGCTACACGTTCG