Detailed information on CNT3011673


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 5e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671434Zea maysSetaria viridis32.2232.696.02251forward
CNT30186721Zea maysSecale cereale58.1545.6293.38453forward
CNT30285424Zea maysTriticum aestivum54.359.4194.8423forward
CNT30554923Zea maysOryza glaberrima54.338.2594.33423forward
CNT30443381Zea maysAegilops tauschii58.6647.2189.28457forward
CNT30250005Zea maysAvena sativa57.7752.4591.78450forward
CNT30684671Zea maysTriticum urartu64.1851.5591.6500forward
CNT30345522Zea maysEragrostis tef54.4342.795.28424forward
CNT30369277Zea maysOryza glumipatula54.343.3893.38423forward
CNT30149090Zea maysBrachypodium distachyon52.8942.2188.11412forward
CNT30103422Zea maysOryza rufipogon54.332.6194.09423forward
CNT30574779Zea maysOryza barthii65.0862.992.11507forward
CNT30604592Zea maysOryza punctata52.6341.1292.2410forward

Expression of CNT3011673

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVQTENQRALTCIRTPKGHRRRLPHLPGTKLVA*

>peptide 2 (35 aa)
MENMARRPFLSSLTLSSAKASGSSARPSGSKLPPG*

>peptide 3 (95 aa)
MAQREWITSSSRFLANVSGYSTRSGPYHGLPDAAAGLAFAAVLRIVTRASPKADDDGTFTALPAKAVEERAMVLLAIAAAFFIALLRSETCRSMVA

Sequence

>CNT3011673
GTCGATTGAACAATAGTTTACATCATGGTACAAACCGAAAACCAGCGTGCGCTCACATGCATCCGGACACCTAAAGGTCACCGGCGGCGCCTCCCTCACT
TGCCGGGGACGAAGTTGGTGGCGTAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCGGG
GTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTAGCCCTCGACGGCG
CCCATGAGCACGACCTGGCAGGCCCAGATGGCAAGGATGCTCTGCGCGTGGATGAGGCTCGGGTTCCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCT
GGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGAAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCAGCG
GGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTACAGCACGCGGTCGGGGCCGTACCACGGGCTCCCGGACGCCGCCGCTGGCTTG
GCCTTCGCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAAGGCGGACGACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGG
CCATGGTGCTGCTCGCCATTGCGGCTGCTTTTTTTATTGCACTGCTACGTAGCGAGACTTGCAGATCGATGGTGGCTTG