CANTATAdb - search

Detailed information on CNT30116728

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 2e-144

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521859	Oryza nivara	Setaria italica	66.86	71.29	92.72	591	forward
CNT30393827	Oryza nivara	Triticum turgidum	68.55	66.89	87.95	606	forward
CNT30664531	Oryza nivara	Triticum dicoccoides	66.86	85.78	89.51	591	forward
CNT30454234	Oryza nivara	Saccharum spontaneum	66.63	79.59	85.06	589	forward
CNT30685368	Oryza nivara	Triticum urartu	63.46	58.99	87.17	561	forward

Expression of CNT30116728

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MHCCNCNCRLVAYAQALLATGSATWSKRFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKAPPGYTLSRPSPSGPPPTR*

>peptide 2 (49 aa)
RTDLLGRRTNWHRFSWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

Sequence

>CNT30116728
CCCGCACCGATTTATTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCT
TGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACAC
ACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGTTGGTGGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCG
ACGTGGTCGAAGAGGTTCTCGATGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCT
CCTTCACCTTGAGCTCGGCGAAGGCGCCGCCTGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAATCCCAT
GAGCACCACCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCG
CCGGCCTTGAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATTGCCCACCGCGAGT
GGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTA
CGATGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAGGTCCATACCTGCACATATATATACTTGTATGTTAGCA