Detailed information on CNT30116701


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Oryza nivaraQuercus lobata64.861.2186.81144forward
CNT30202287Oryza nivaraPisum sativum66.2217.7389.12147forward
CNT30220823Oryza nivaraHordeum vulgare92.796.5292.72206forward
CNT30541456Oryza nivaraBrassica napus64.8616.287.5144forward
CNT30314046Oryza nivaraCamelina sativa64.863.7688.19144forward
CNT3082978Oryza nivaraBrassica juncea64.861.7787.5144forward
CNT30150636Oryza nivaraBrachypodium distachyon91.4489.0494.58203forward

Expression of CNT30116701

Peptides detected in this lncRNA

>peptide 1 (30 aa)
IIIIVIYLLVWIVFTTIISICTNTSTVSNR*

>peptide 2 (36 aa)
DYYYCNLPFGLDSFYNYYIYLHKYLDGFQSLIHKVR*

Sequence

>CNT30116701
GATTATTATTATTGTAATTTACCTTTTGGTTTGGATAGTTTTTACAACTATTATATCTATTTGCACAAATACCTCGACGGTTTCCAATCGTTAATACATA
AAGTCCGATAAGCATGTCTTGGGTTGGTACGCAAATAGGATCCCCAATAGCGGGAGATAGGAGATTCATATGAGAAAACATAAGTAAACGAGCTTCCGCC
TAAGCTTTATAAGGTAAAGGTA