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Detailed information on CNT30116696


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Oryza nivaraOryza sativa59.2474.9899.912349forward
CNT30670953Oryza nivaraSetaria viridis8.536.51100337forward
CNT30524653Oryza nivaraSetaria italica20.166.5396.86797reverse complement
CNT30548882Oryza nivaraIpomoea triloba25.0237.6398.69992reverse complement
CNT30378671Oryza nivaraArabidopsis thaliana3.8153.5598.68151forward
CNT30632593Oryza nivaraVigna unguiculata25.1759.1297.7998reverse complement
CNT30504983Oryza nivaraNicotiana attenuata9.6120.9298.95381reverse complement
CNT30635645Oryza nivaraCapsicum annuum10.3966.5692.96412reverse complement
CNT3098505Oryza nivaraSolanum tuberosum11.2245.3695.06445forward
CNT30304298Oryza nivaraTriticum aestivum30.1645.299.251196forward
CNT30221494Oryza nivaraHordeum vulgare26.4884.5496.861050reverse complement
CNT30400948Oryza nivaraTriticum turgidum30.1647.8499.411196forward
CNT30569653Oryza nivaraActinidia chinensis7.9747.0996.84316forward
CNT30585815Oryza nivaraMusa acuminata25.0740.9695.98994reverse complement
CNT30234810Oryza nivaraBrassica oleracea14.2274.594.15564forward
CNT30553404Oryza nivaraOryza glaberrima32.5991.599.231292reverse complement
CNT30147394Oryza nivaraMedicago truncatula25.125098.29996reverse complement
CNT30440683Oryza nivaraAegilops tauschii19.8581.4799.75787reverse complement
CNT30248040Oryza nivaraAvena sativa19.6757.9598.59780forward
CNT30662061Oryza nivaraTriticum dicoccoides29.8461.6599.411183forward
CNT3081478Oryza nivaraBrassica juncea18.7464.1695.15743reverse complement
CNT30143344Oryza nivaraLolium perenne35.3362.6399.141401forward
CNT3016633Oryza nivaraZea mays31.0564.4297.641231forward
CNT30229838Oryza nivaraAnanas comosus11.1710098.19443forward
CNT30218527Oryza nivaraKalanchoe fedtschenkoi18.8950.398.93749forward
CNT3067373Oryza nivaraLeersia perrieri7.0692.7299.29280reverse complement
CNT30655299Oryza nivaraRosa chinensis24.9934.9298.69991reverse complement
CNT30203595Oryza nivaraHelianthus annuus25.354.7597.011003reverse complement
CNT30689128Oryza nivaraTriticum urartu30.1664.3498.911196reverse complement
CNT30721611Oryza nivaraTriticum spelta5.6548.5999.55224forward
CNT30595506Oryza nivaraOryza meridionalis8.731.36100345forward
CNT30360998Oryza nivaraLactuca sativa7.3110098.97290reverse complement
CNT30369805Oryza nivaraOryza glumipatula36.1299.8697.971432reverse complement
CNT30154718Oryza nivaraPrunus persica11.9568.493.67474reverse complement
CNT30420891Oryza nivaraPapaver somniferum14.8821.9792.54590forward
CNT30323793Oryza nivaraAsparagus officinalis5.0463.2998200reverse complement
CNT30151602Oryza nivaraBrachypodium distachyon5.3742.5199.53213forward
CNT30104648Oryza nivaraOryza rufipogon14.73100.1799.14584forward
CNT30576076Oryza nivaraOryza barthii42.0937.1399.821669reverse complement
CNT30582488Oryza nivaraEchinochloa crusgalli30.5499.7599.751211reverse complement
CNT30495774Oryza nivaraDigitaria exilis9.9199.24100393forward
CNT30604605Oryza nivaraOryza punctata2.1737.2391.8686forward
CNT3040451Oryza nivaraMarchantia polymorpha4.5630.8393.37181reverse complement

Expression of CNT30116696

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFELRELHFPIVPGPVFHIHYLFLVLLVE*

>peptide 2 (66 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFAPQRR*

>peptide 3 (67 aa)
MTLENATFPKECKIVTFPTRSDRMVFFYTKMSQIPIKKRKKFFSPSAPWYFPLPPLETGVSNLICLN*

>peptide 4 (51 aa)
LRLPCYDFTPVEDPTVVCANKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 5 (53 aa)
MIYYESVKRRWRAQENRNCCVKQVTSSAGHQQTIKQYRIQDAISESGNSHLSQ*

>peptide 6 (44 aa)
MKKLPNCPMLAIKFSKMEQILEPFTREKQFSLLLHMVGTNAFQK*

>peptide 7 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 8 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 9 (37 aa)
PYGYLVTTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*

>peptide 10 (30 aa)
MLNTLHRSKTTSKGISSYCRKGKITPFLYI*

>peptide 11 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 12 (68 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLATFTFNPIHRLRALYA*

Sequence

>CNT30116696
CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACA
GAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCA
TGCTGATCCGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGC
CTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACT
GGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTACTATTACCACTACGTACCACAATTTCTCCTTAGGCGCATGTC
TCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGT
ACCATCCCGTTAAGGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAG
GCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCG
AACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTT
CGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCC
GCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCG
GCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCA
CGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATC
ATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCT
TCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTA
GGTCAAAGCCGTAGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACTACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTT
CGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCAGATTTTGACTATGATTGGGCCGAACAGTGGTAGAACCTGGTGA
ACCGGGCCTACTACTAAACATTGATTCTCTCTCCTAACCACTCTTAAATATGTTAAATACACTCCATCGATCAAAAACTACAAGCAAGGGAATCAGCTCT
TATTGCCGTAAAGGAAAAATAACCCCTTTCCTTTATATATAGTCCGCCAAGGGCCTTCGCCACCTATTCCTTAATTACGTAGTGGGAAGATTTCTCTATG
TCAATTCAAAACAAAACAAACGGACGACTGAATCTAAAGTCTACTAGAGAGAAGATTGGTTCGAACGTCAACTACTGATTGCTCTATCCAACCAGCACAT
ACCGTTTGCTATGATATTGTTTTGCGGATTTGCTCATATTGTTTTCTTGCCCGGGCATTGCTGCGGAAGAGTGAAATGAAAAACTCTTCTTGAAGAAGAG
GACTCTTCCGCTTGATCTTTTGATACGGTGAGGGAACAGGTTTTATGCGTTCTTTGAGCAAATGGGGAAACAAACTGCTGATACAGAAATCTTTAACTGA
ACTGCCGAAGGCACAAGAGAGACTATAGCCAGGAAGGATAAGCAAAGGAATCCAGATTCAATCGATTGTTTGAAGCCAAGGAGCAAGAAAACGGATGCGC
GTGCTAACGCTTTCGCGCTAGTGCGCTCAATCCGTTGCTTGTTCTCGAGCTAGTCCATCTTTCTATACGAATTTCTTGAAAGAATACTTCTCTTATGATC
TACTACGAGAGTGTCAAGCGGAGGTGGAGAGCACAAGAAAACAGAAATTGCTGCGTTAAGCAAGTCACTTCTTCGGCTGGGCATCAACAGACAATCAAGC
AATATCGGATTCAGGACGCCATATCGGAATCAGGAAATAGCCACTTAAGTCAATAGCCACTTCAGTCAGTCCATCAGTCTTTCCATATTATATTTCCAGT
CAAGTCAGTCAACACTTCTACAATCCAGTCTCTTAACACTAGCTTTACTTGGGAAAGTAGTGAAAGTCCTGCTGCTGGATAAAGATACTGGAAAAAGTCT
CAAGTTCCACTAGGCGAGATGAAAAAGTTCAGAACTGGGATGCCAAAAAGAGCCGATTTACAAGCAAAATGAAAAAACTACCAAATTGCCCCATGCTGGC
TATCAAGTTTTCAAAAATGGAGCAGATTTTGGAGCCATTTACGAGGGAGAAGCAATTTTCTTTACTTTTGCACATGGTTGGGACAAATGCTTTTCAAAAA
TGACCCTTGAAAATGCCACTTTCCCTAAGGAATGCAAAATAGTAACTTTTCCTACTAGGTCGGATAGAATGGTGTTTTTCTATACTAAAATGAGTCAAAT
TCCGATAAAAAAGCGAAAAAAGTTCTTCTCACCTAGTGCACCTTGGTACTTTCCTCTTCCGCCCTTAGAAACCGGGGTAAGTAATCTCATATGTTTGAAC
TGAGAGAGCTTCATTTTCCAATAGTGCCAGGACCTGTGTTCCATATCCATTATCTTTTCCTTGTCCTTCTTGTCGAATAGAAAGCAAATAGATGTTCTGC
GATAAAGCGTATGTCCTATATTTCTGCCTTTCATTCATCTTACCATACTTCTTATTTCCTCTGACTGTAACCTGAACCAGCCAGAGTTAAAATTCCGATC
GGAAAAGTGAAACGTATCTTCCTTAGTGAAGTAGAGCGTTTCCAAAATTCCGTGCATCGCCGGCTCTCACCAGTCCCGATGCAGGTAGAGTAGGACATGT
GCGTTACCAAGCATGGCTTAAAATAAAAGGCTTTTCTTGGTGCGTTCACTACTCGAAACGGGTCCTTCCTCTATCGAATATCCCTAACTAGCTTTCCAAG
CCAGACGCGTTATTTCCAAGTTCCTTGGGTAAGTGAAGAGATGAAGTCCTCTTCTTCACAGTGAAAGTAGCTCAAGCGGAAAGCAAGCAACTACACAGGA
TCACCAAAACGTTGTTTTTGTGCCTATGTTCACACTTCGTTCCTGCTCAACTGTGCTTTTTAGTTAAAACAAGCTAATTCGTTTGTTCTAGTCCGGTAAA
ACCTACTATTTGTGAGATTTCTTACTCTGATTTCATTTGTTTCACTCACTTTTTCTATCTTTTTCTGCATTCTTTCCTTACACTCTTTCTCTGTAGGTTA
AGCCTATTTCCCTCGATTTCTCTATTGCAATAGCTCTGTTGCCAAAGAATAGCTAAGTTGCCAAAGAAGCTCAAACCCTTTCTGCTTTGACCTTCGACCG
TGTTAACTCTTCTTTTAGAGGAAGTCAGTCAAGTTAGAATAGAATAGAACTAGCCGACGCTTTCG