Detailed information on CNT30116676


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 9e-135

BLAST vs NONCODE:
NONBNAT005173, E-value = 2e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522398Oryza nivaraSetaria italica54.3656.6190.42574forward
CNT30589591Oryza nivaraMusa acuminata36.9369.1591.54390forward
CNT30665715Oryza nivaraTriticum dicoccoides41.6751.8391.36440forward
CNT30100939Oryza nivaraOryza rufipogon46.2161.7797.13488forward

Expression of CNT30116676

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRRRLGWFFVVCGGDGRRGRGDLYTAYEWRSGGLVDAR

>peptide 2 (49 aa)
RTDLLGRRTNWHRFSWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

>peptide 3 (54 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCSRWGPCR*

>peptide 4 (95 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALFSMGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKVSGSSARPSGSKAPPGYTLSRPSPSGPPPTR*

Sequence

>CNT30116676
CCCGCACCGATTTATTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCT
TGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACAC
ACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGT
TGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCAGGCGTTGTTCTCGATGGGGCCCTTGCCGGTGACGAT
GGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGTGTCAGGGTCGTCGGCGAGG
CCGAGCGGGTCGAAGGCGCCGCCTGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAATCCCATGAGCACCA
CCTGGACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTT
GAACCACACCGCCTCCCCGAACTTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATTGCCCACCGCGAGTGGATCACC
TCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGAAGCTGGTGG
TCTGGTGCAGCGCCGACGCGGCCATCGTTCTAACGAGGGCGATGCGGCGGCGGTTGGGTTGGTTTTTTGTGGTGTGTGGTGGAGATGGGCGGCGCGGGAG
GGGAGATCTTTATACGGCGTACGAATGGCGGAGCGGTGGACTGGTGGACGCGCGGC