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Detailed information on CNT30116662


BLAST search results

BLAST vs Swiss-Prot:
sp|P51431|R27AB_ORYSJ, E-value = 1e-84

BLAST vs NONCODE:
NONBNAT005965, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Oryza nivaraOryza sativa13.2459.8100299forward
CNT30316655Oryza nivaraCorylus avellana1071.7592.04226forward
CNT30628786Oryza nivaraVigna unguiculata10.0946.5392.11228forward
CNT30178120Oryza nivaraSecale cereale10.3126.0695.71233forward
CNT30283510Oryza nivaraTriticum aestivum10.3132.4196.57233forward
CNT30220676Oryza nivaraHordeum vulgare10.3141.3996.14233forward
CNT30586129Oryza nivaraMusa acuminata9.9642.2991.11225forward
CNT30553804Oryza nivaraOryza glaberrima16.9163.3595.29382forward
CNT30435195Oryza nivaraAegilops tauschii10.3140.2496.14233forward
CNT30241998Oryza nivaraAvena sativa10.3129.4296.14233forward
CNT30656101Oryza nivaraTriticum dicoccoides10.3131.2896.57233forward
CNT30456592Oryza nivaraSaccharum spontaneum9.7826.8995.02221forward
CNT30130551Oryza nivaraLolium perenne10.3134.2196.57233forward
CNT30720110Oryza nivaraTriticum spelta10.3136.8796.57233forward
CNT30341903Oryza nivaraEragrostis tef10.3127.6196.14233forward
CNT30368046Oryza nivaraSorghum bicolor10.3138.296.14233forward
CNT30576569Oryza nivaraOryza barthii31.2558.3593.77706forward
CNT30582668Oryza nivaraEchinochloa crusgalli9.9638.7996.89225forward
CNT30499448Oryza nivaraDigitaria exilis10.2330.695.67231forward
CNT30594254Oryza nivaraEragrostis curvula10.3128.1197233forward

Expression of CNT30116662

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVTNTYNATYVTQSANDRNHFYLSHTIGTQYNQVAIQE*

>peptide 2 (74 aa)
MSTVFRKLKTNQLLIIKSLRYIRIYAVVRDNISCWKKLNGTISCYRLCTGTQKNHKQMFSRIQNAIIVAIGNNR*

>peptide 3 (64 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAAAGEGSPPRLRRREGWGEG

>peptide 4 (59 aa)
MKHHSTPPTPHPPKKSIRLHHPMKPRVIVRKKKLCNNPKLQNKNGHKHIQCYLCDTICK*

>peptide 5 (47 aa)
MIKKLWRLLPLRPAISTIASQSMQKNNYLIAISEISKTHQSNETGAN*

Sequence

>CNT30116662
GCCAACTGCAGCACGGACTCCAAGACGTAATATGTGTATAACAGGTGGGACCAAGTATTAATAGTATAGTAAGCAACTATTATATGAATTAGCTATTACA
TTGGCTATAGAAGATTTGGGGCTAGTAGTGGCCTGCACTGTTGACCTTGCTCTTAAGGCTCCTAACTATTATGTCGACGGTTTTCAGGAAGCTTAAGACT
AACCAGCTTCTAATAATAAAAAGTCTAAGGTATATCCGTATATACGCTGTTGTACGTGACAATATAAGCTGTTGGAAGAAGCTCAACGGTACCATTTCCT
GTTATAGATTGTGCACAGGAACCCAAAAGAATCACAAACAAATGTTTTCCAGAATACAGAACGCTATCATAGTAGCAATAGGCAACAACAGATAACAACC
TAATCGTACAAATGCACGATCCATTTTACGCTCTGCTTAACTATAAATAATTATAAATTTTATAATATCTTAGTAGAACAAAAATTGGGTAAAAACATTT
ACTCGTTTAAAAGCTAAAACTGAAAAGTAAATTGATGAAAAAAAAACCCAAAATCAACTCCAAAATAAACTGTCAGGTACACACGGCTGGTAAGCCAACG
TAGCATACAGTAAGAGTAGAACTTCACTGGGCTTCAATAAAAACAAACATTAATCCCACCAGATTAACTGTCACATCTGGAGCGCAACATAACTTATTTT
TTCAAATAAACCTGTTTTTCAAGTTTGTAATAGTTAACACCTAACTAATCATACGCTAATGAAATTTCTTGTTCCTACAGCAGCAAAAGGCAAAAGCTAA
ACAAGCTTTCAAACAGATCCTGAATAACTGCAAAACCCGAGAAGCTGCAAAGTAGAAGCTAACCAGCACCCCATAATTTCAGATCAAGAAAGGATCACAT
ACACATTAGTCACGTCTAGAGCAATTGTATATCCAAACTACAGAAATTATCAGAAAAGCATTGGTCAAATCTAGATAATTTCTGTAGTTTGGGGGTTGAA
TCATCAGAATGAAGCATCATTCAACACCCCCCACCCCCCACCCCCCAAAAAAAAGCATAAGATTGCACCACCCAATGAAGCCAAGGGTTATTGTAAGAAA
AAAAAAACTCTGTAACAACCCTAAACTTCAGAACAAGAATGGTCACAAACACATACAATGCTACTTATGTGACACAATCTGCAAATGATCGCAACCACTT
CTACTTGAGCCATACCATCGGCACTCAGTACAATCAAGTCGCCATACAAGAATAAAATTTTCTATGGTAACCTTCACTATGCTTAATGGCAGAATATACA
ATCAGATTAACAATTGCACATCTAACTGAACGGATGAGCAGAAATGATTAAAAAATTATGGAGACTACTTCCATTGAGACCAGCAATCAGCACAATTGCA
TCCCAGTCCATGCAGAAAAACAATTATCTAATTGCAATCAGTGAGATCTCAAAAACACATCAGAGCAACGAAACTGGCGCAAACTAATCATCCAACAGGA
ATCAGAAAACACAAGTGAACTCACATCGCATCATCAATTCAGTAACAGATAATAATATTCCAAGAGGCTACTACTCAAAGTTTTCCAATTGTAAACGGAG
AACAAAACGCATATAATCTGAATAACATGTAACCAGCAGCAGCTCATCTCAGCTCATGATAATAACAGATAAAAGGGAATGAAAAGCATCAGATCAGAGC
AAAGCGAGCAGCAGCAAGCATCAACCTAGGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGATCGAAGTGGTTGGCCATGAA
GGTGCCCGCGCCGCAGTCGTTGTTGGGGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCCACCTTGTAGAACTGGAGCACGGCGAGCTTC
ACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGG
ACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTC
CTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCG
GCGGCGGGGGAGGGGTCGCCTCCGCGGCTGCGGCGGCGAGAGGGGTGGGGGGAAGGTGG