Detailed information on CNT30116660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553766Oryza nivaraOryza glaberrima89.2775.4699.581190forward
CNT30370330Oryza nivaraOryza glumipatula89.5799.9299.51194forward
CNT30576582Oryza nivaraOryza barthii82.7598.2299.461103forward

Expression of CNT30116660

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 2 (56 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQARSFLLS*

>peptide 3 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 4 (33 aa)
MNDLRSFTFFTVSCATGDFVAVNSMMVADGEMR*

>peptide 5 (81 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCSSDVKYWVLTNRSGFSFFLSV*

>peptide 6 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

Sequence

>CNT30116660
AAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAAAAT
CAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAACAACCTTCACCCCGCACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGGACT
CACAGTCCTGTAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGATGA
TCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGATCA
AAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTCTCCCATGGTGCCATTC
CCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAAATT
TCTGGGATGACCAGTTGCTGCTCCTCAGATGTAAAGTATTGGGTTTTGACCAACAGATCTGGTTTTTCATTCTTTCTTTCTGTATGAATGATCTGAGATC
CTTCACCTTCTTCACTGTCAGTTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGAAAACTACACTGGATG
CACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGAA
ACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTAATTCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATACA
TTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGGTGAAGCATGGCAACA
TGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAATCAAGCCAGAAGTTT
CTTGCTTAGCTAAGCAGAGTCCCATTTCAGCTGGACACTGATGAATTCATGCGAGATAAACTAATTTGCATCTGATCTGGAGCTCCATTAGAATCCAAAA
GGAGAAGCCAAAAGAACTAAAAAGGGAACAGGG