Detailed information on CNT30116641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553440Oryza nivaraOryza glaberrima73.7633.9499.46371forward
CNT30576146Oryza nivaraOryza barthii78.5328.6999.24395forward
CNT30604007Oryza nivaraOryza punctata49.1118.4983.81247forward

Expression of CNT30116641

Peptides detected in this lncRNA

>peptide 1 (61 aa)
FCYKEIGSESVSRPTCRERRKLEVRVSPDLWRAIVAVATPRVHLPPSAIVAASLPVEPVPQ*

>peptide 2 (50 aa)
MPASACLLFQFFLPGCESPIPSPIWICMYTRELREIRIACTKFTEITAVS*

>peptide 3 (44 aa)
MHLSKSFILYLQSWISLVKLHLINVGRMVIHGIIIMTSSTLQFN*

Sequence

>CNT30116641
TTTTGCTATAAGGAAATTGGAAGCGAGAGTGTCTCCCGACCGACTTGTAGAGAGCGAAGGAAATTGGAAGTGAGAGTGTCTCCCGACTTGTGGAGAGCGA
TCGTAGCAGTGGCAACACCACGCGTCCACCTTCCTCCCTCCGCCATCGTCGCCGCCTCTCTTCCTGTAGAGCCAGTACCGCAGTAAACCATGCCTGCGTC
TGCCTGCCTCCTCTTCCAATTTTTCCTCCCCGGATGCGAATCTCCTATCCCGTCCCCGATCTGGATCTGTATGTATACACGCGAGCTGCGGGAGATCCGG
ATCGCATGCACTAAATTCACTGAAATCACCGCAGTGAGTTAAGTATATACTCCACCTAATAACGAAATGCACTTGAGTAAATCGTTCATTTTGTATCTTC
AGTCCTGGATTTCTCTTGTTAAGCTCCATCTTATCAATGTTGGTAGAATGGTGATCCATGGGATAATTATTATGACAAGCTCTACTTTACAGTTCAACTA
GAC