Detailed information on CNT30116634


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728378Oryza nivaraCorchorus capsularis305.0187.363forward
CNT3084566Oryza nivaraVigna radiata46.6716.6487.7698forward
CNT30659451Oryza nivaraTriticum dicoccoides81.947.9186.63172forward
CNT3013584Oryza nivaraZea mays89.5215.1182.45188forward
CNT30477240Oryza nivaraArabidopsis halleri30.9511.2889.2365forward
CNT30148068Oryza nivaraBrachypodium distachyon49.5217.9688.46104forward
CNT3039904Oryza nivaraMarchantia polymorpha31.433.9290.9166forward

Expression of CNT30116634

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LTREVLRRQHEHLRGRGSRGRCAWGRWRRRRCRRARRARTSPPG*

>peptide 2 (59 aa)
MNTYGDVGVAGVALGVGGGEDGVDEHEEPERHRRVDVAAGHAGGAVDEDEDHAAERPRDA

Sequence

>CNT30116634
CTAACGCGCGAAGTGCTGAGGAGGCAGCATGAACACTTACGGGGACGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGAC
GAGCACGAAGAGCCCGAACGTCACCGCCGGGTTGATGTGGCCGCCGGACACGCCGGCGGTGCAGTAGACGAGGATGAAGATCATGCCGCCGAACGCCCAC
GCGATGCCGA