Detailed information on CNT30116632


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 5e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Oryza nivaraOryza sativa30.8113.11100118forward
CNT30672972Oryza nivaraSetaria viridis52.2288.8983.5200forward
CNT30272384Oryza nivaraChenopodium quinoa71.5425.6381.02274forward
CNT30404662Oryza nivaraBeta vulgaris42.0420.5985.71161forward
CNT30631438Oryza nivaraVigna unguiculata29.2416.9285.71112forward
CNT30709232Oryza nivaraGlycine max69.4535.6686.09266forward
CNT30300179Oryza nivaraTriticum aestivum68.4122.4582.44262forward
CNT30393350Oryza nivaraTriticum turgidum68.4126.1782.06262forward
CNT30561426Oryza nivaraActinidia chinensis49.3525.6183.6189forward
CNT30144776Oryza nivaraMedicago truncatula90.8626.585.34348forward
CNT30254596Oryza nivaraAvena sativa45.9513.2789.2176forward
CNT30311914Oryza nivaraCamelina sativa47.2629.2981.77181forward
CNT3062430Oryza nivaraArabidopsis lyrata20.636.8584.8179forward
CNT303614Oryza nivaraZea mays91.9161.7583.81352forward
CNT30717839Oryza nivaraMalus domestica golden33.6825.3983.72129forward
CNT30685178Oryza nivaraTriticum urartu68.4132.2782.06262forward
CNT30354596Oryza nivaraLactuca sativa20.897.218580forward
CNT3053264Oryza nivaraAmborella trichopoda31.0719.0186.55119forward
CNT3037990Oryza nivaraCucumis melo22.9829.5385.2388forward
CNT30150411Oryza nivaraBrachypodium distachyon29.522.3888.5113forward

Expression of CNT30116632

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVGGELLLSVDHPQCNQHNLETVCLSMNSLMSSLIMASSEPK*

>peptide 2 (33 aa)
MTLLPTFDVMINSVFLKSTVRPLLSVSLPSSKI*

>peptide 3 (39 aa)
MCLFNLIEENNSVWSAANCFCQLTTLSVTNITWRLYASP*

Sequence

>CNT30116632
CTGGTGTCTTTCTCATCATAGTCAAGGTCAAATCCAATCTTCCGTCCTCCCTTCTCAATGACACTGCTTCCAACATTTGATGTCATGATCAACAGTGTGT
TCTTGAAATCAACAGTCCGACCCTTGCTGTCAGTTAGTCTTCCATCTTCTAAGATCTGAAGCATCATGTTGAAGACATCAGGATGTGCCTTTTCAATCTC
ATCGAAGAGAACAACAGTGTATGGTCGGCGGCGAACTGCTTCTGTCAGTTGACCACCCTCAGTGTAACCAACATAACCTGGAGACTGTATGCCTCTCCAT
GAACTCACTCATGTCTAGTCTGATCATGGCCTCTTCTGAGCCAAAGTAGTAGGCTGCAAGAGCCTTTGCTAACTCTGATTTAC