Detailed information on CNT30116578


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370178Oryza nivaraOryza glumipatula22.5784.5799.29422forward
CNT30101301Oryza nivaraOryza rufipogon64.2843.8599.251202forward

Expression of CNT30116578

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGGEERQLCFLKCFSVFLGSLSPSTCLSTDG*

>peptide 2 (36 aa)
MRERERERERERERERCFERFQRSYLAQRSRNELSD*

>peptide 3 (82 aa)
MPHSTHKLSYVFWQTSMVLIRRRGYFPRGAFFTHKLTSVSIVLNDAPTWLMVYTMCVSYFLMMPSKSGMASCQFPCVFLILL*

>peptide 4 (78 aa)
LNFDFHAVSVAVFFFLSLSPRCLRARSLSFVHSRFLVLSLILSSERERDPSFGSIFSPWIQPVNFHSTFSFCVHEMKD*

>peptide 5 (74 aa)
VKFRFPRRVRSRFFFLIAFSSLSPRALSLFRSLSLSCSLSHSLQREGERSIVWIDFLPLDSTGELSQYLFLLCS*

>peptide 6 (37 aa)
MLVSCSCLCFVSAGVELLLCTNLQITCSRSVYILCFV*

Sequence

>CNT30116578
GTTAAATTTCGATTTCCACGCCGTGTCCGTAGCCGTTTTTTTTTTCTTATCGCTTTCTCCTCGTTGTCTCCGCGCGCGCTCTCTCTCTTTCGTTCACTCT
CGCTTTCTTGTTCTCTCTCTCATTCTCTCCAGCGAGAGGGAGAGAGATCCATCGTTTGGATCGATTTTCTCCCCCTGGATTCAACCGGTGAACTTTCACA
GTACCTTTTCCTTCTGTGTTCATGAGATGAAAGATTGAGAGGGATTGCCCAGATAGAGTACATGGATGAGATTATCAGCATATCAATTTTCTGCTTTGTG
TGATTTGGGATTAGACTAAATCGTAACCAACGAACTAGGCATCGGTGGAAACGATGGCTGGATTTTTTTTTTTTTGCCTTGTCACTGAGCTCGGATTTGT
GGCTGGTAGATAGGGATTTTTTTTGTGTTTGATTTGCATTTTTCGGAGTAAATTGGACATCCTTTTATCAGATTTACAGGTTTGCTAGGATTTTTCCCCT
CTGTTCTGTTCTGTCCTGTACAGGGGATTTTGTTATTTCCTTCTGTTCTTAACATGCACAACTCCTTCTGTATATGTGATATGCAAGCAGCAGATTTAGT
GATGAACTGTGTACTTGTCAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTTTGAAAGGTTTCAGCGATCTTATTTGG
CTCAGAGATCACGAAATGAACTCTCTGACTGAAGACAGTGACACTGCTATATTTCTATAGATTATTTGCTTGTTCAAAATTTTGCATGGGAGGCGAAGAG
AGACAACTCTGCTTTCTGAAATGTTTCTCTGTGTTTCTTGGTTCACTTTCACCCAGCACATGCCTGAGTACCGACGGATAGCAAATGATGCTTCGTACTA
GCACATCATATTTTTCAGGACTGGACTGGGCTTGCATTTGTTTTGTGTAAACTGCATATACATTCGGCGACGTATTGCACTCCCTGGTTGTTGTAGTTGC
ATTTTCAAATCTGTGCAACTTCAGTTATAAATTTGTGTAATCATTGATTTGCTTCTCTGTACAGCTTTTTTATGTGTCTATGCTTGGAAAAGTAGGAAGA
AGATGCCACATTCAACGCATAAGCTTAGCTATGTTTTTTGGCAGACATCTATGGTTCTGATTAGGAGAAGAGGTTATTTTCCAAGGGGTGCTTTTTTCAC
ACATAAGCTTACCTCTGTTTCCATAGTTTTGAATGATGCACCTACATGGTTAATGGTATATACCATGTGTGTTTCATATTTCTTAATGATGCCAAGTAAA
TCTGGCATGGCATCTTGCCAATTTCCCTGTGTGTTCCTGATCTTATTATGAGCATATAATAACTGTATCAATACTTTTTCAGGTTTGCTCAGTGCCTTAT
TTTTCTTTTCAATTATGAATGCATCCCAATATTGTTCAGTGGTGCTGATCCAAATTAGTTAGCAACAAGCCACTATAAAATCCAGTATTTTCTGGCCTCT
CATTGTGTTCTTTTTGTATGTTAGTATCATGTAGTTGTCTGTGTTTTGTTTCTGCTGGAGTAGAACTCCTACTATGCACAAATCTGCAAATCACTTGCAG
CAGATCAGTGTATATTTTGTGCTTTGTGTGATGTGGGGTTAGCGCACAGTGAATCGGTGATTTTTTTTTTTTGGCTTGTCACTGATCTTGGATTTGTGGC
TGGTAGATGGGGATTTCCTAGCTCCACCCCAGTAGGATTGGTAGGGGGAATTAATTATGACAACATTATATCGCTGATATGTGTCATTTGAATACAGTAG
GGGAAGCATCGCTGTAACTTTATCTGAATGTTGCATTCATTTTCAGATATTTAGTTGACTGATCTGTTAA