Detailed information on CNT30116557


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 2e-40

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693219Oryza nivaraOryza sativa84.0391.3296.91421forward
CNT30524139Oryza nivaraSetaria italica47.559.890.76238forward
CNT30553477Oryza nivaraOryza glaberrima88.2295.0595.48442forward
CNT30369993Oryza nivaraOryza glumipatula75.2594.49100377forward
CNT30101348Oryza nivaraOryza rufipogon95.6126.6199.58479forward
CNT30576255Oryza nivaraOryza barthii95.6129.9497.08479forward
CNT30498154Oryza nivaraDigitaria exilis47.747.1490.38239forward
CNT30604038Oryza nivaraOryza punctata67.8619.7892.35340forward

Expression of CNT30116557

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTNICIWKRQERIGINIGKKKQLEN

>peptide 2 (94 aa)
MLHHSTRSETTTEAQDKVQGGLLLDVIVGKGAAILELLAGEDEALLVWRDALLILDLGLHVVDGVRGLNLQSDGLASEGLNEYLHLEEARKDWN*

>peptide 3 (38 aa)
MTDERHRYNEVQCCTTAHAQRPPRRRRTRCRVDSFWML*

>peptide 4 (45 aa)
MKSNAAPQHTLRDHHGGAGQGAGWTPSGCYSRQGCGHPRAACRRR*

Sequence

>CNT30116557
TCAAACATCTCAGAAACATTAACAGAAGTAGAATGATAATATCATCGATTGGTACCGATGCACAGTGAAGCAAATTGTACTAGTATGGATAATAGTATCA
ACACAACTTAGGGACTCTAAACCAGAACACAACACAACCATGACACGATGATATGACAGACGAGCGGCATAGGTATAATGAAGTCCAATGCTGCACCACA
GCACACGCTCAGAGACCACCACGGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCT
TGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCAACCTCCAG
AGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCATCTGGAAGAGGCAAGAAAGGATTGGAATTAACATAGGTAAAAAAAAGCAGCTGGAGAAT
A